PKBDS5249JJKD

{
    "@context": "/terms/",
    "@id": "/analysis-sets/PKBDS5249JJKD/",
    "@type": [
        "AnalysisSet",
        "FileSet",
        "Item"
    ],
    "accession": "PKBDS5249JJKD",
    "aliases": [
        "kyle-gaulton:2025_peakCounts_snATACseq_Alpha"
    ],
    "annotation_category": "Chromatin accessibility",
    "annotation_type": "chromatin_accessibility_peaks",
    "assay_titles": [],
    "audit": {
        "ERROR": [
            {
                "category": "unexpected input file set",
                "detail": "Analysis set [PKBDS5249JJKD](/analysis-sets/PKBDS5249JJKD/) links to file set(s): [PKBDS0470WCHR](/analysis-sets/PKBDS0470WCHR/) in `input_file_sets` that are not represented in the `derived_from` of the file sets of the files in this analysis. The analysis set input files are expected to belong to the input file sets.",
                "level": 60,
                "level_name": "ERROR",
                "name": "audit_input_file_sets_derived_from",
                "path": "/analysis-sets/PKBDS5249JJKD/"
            }
        ],
        "WARNING": [
            {
                "category": "missing samples",
                "detail": "Analysis set [PKBDS5249JJKD](/analysis-sets/PKBDS5249JJKD/) has `input_file_sets`, but no `samples`. With the exception of multiplexed data, analysis sets are expected to specify all the samples associated with its input file sets.",
                "level": 40,
                "level_name": "WARNING",
                "name": "audit_analysis_set_samples",
                "path": "/analysis-sets/PKBDS5249JJKD/"
            },
            {
                "category": "missing derived from",
                "detail": "Analysis set [PKBDS5249JJKD](/analysis-sets/PKBDS5249JJKD/) links to file(s) [PKBFI4218AMER](/tabular-files/PKBFI4218AMER/), [PKBFI0821OGCF](/tabular-files/PKBFI0821OGCF/), [PKBFI1786FAZP](/tabular-files/PKBFI1786FAZP/) that have no `derived_from`. Files in an analysis set are expected to be derived from other files.",
                "level": 40,
                "level_name": "WARNING",
                "name": "audit_input_file_sets_derived_from",
                "path": "/analysis-sets/PKBDS5249JJKD/"
            }
        ]
    },
    "award": {
        "@id": "/awards/U24DK138512-DK138515/",
        "component": "data coordination",
        "name": "U24DK138512-DK138515",
        "title": "A Data and Administrative Coordinating Center for the PanKbase Consortium U24DK138512-DK138515"
    },
    "control_for": [],
    "creation_timestamp": "2025-09-02T20:09:50.503798+00:00",
    "description": "Peak calls and read counts for pancreatic alpha cells from snATAC-seq",
    "file_set_type": "principal analysis",
    "files": [
        {
            "@id": "/tabular-files/PKBFI4218AMER/",
            "accession": "PKBFI4218AMER",
            "aliases": [
                "kyle-gaulton:2025_peakCounts_snATACseq_Alpha_hg38_CPM"
            ],
            "content_type": "element quantifications",
            "creation_timestamp": "2025-09-02T23:03:21.350846+00:00",
            "file_format": "txt",
            "file_size": 157367010,
            "href": "/tabular-files/PKBFI4218AMER/@@download/PKBFI4218AMER.txt"
        },
        {
            "@id": "/tabular-files/PKBFI0821OGCF/",
            "accession": "PKBFI0821OGCF",
            "aliases": [
                "kyle-gaulton:2025_peakCounts_snATACseq_Alpha_hg38_counts"
            ],
            "content_type": "element quantifications",
            "creation_timestamp": "2025-09-02T23:04:42.055432+00:00",
            "file_format": "txt",
            "file_size": 45350767,
            "href": "/tabular-files/PKBFI0821OGCF/@@download/PKBFI0821OGCF.txt"
        },
        {
            "@id": "/tabular-files/PKBFI1786FAZP/",
            "accession": "PKBFI1786FAZP",
            "aliases": [
                "kyle-gaulton:2025_peakCounts_snATACseq_Alpha_hg38_union_overlap_calledpeak"
            ],
            "content_type": "peaks",
            "creation_timestamp": "2026-03-09T22:27:18.870211+00:00",
            "file_format": "bed",
            "file_size": 3313908,
            "href": "/tabular-files/PKBFI1786FAZP/@@download/PKBFI1786FAZP.bed"
        }
    ],
    "input_file_set_for": [],
    "input_file_sets": [
        {
            "@id": "/analysis-sets/PKBDS0470WCHR/",
            "accession": "PKBDS0470WCHR",
            "aliases": [
                "kyle-gaulton:embedding_islet_scATAC"
            ],
            "file_set_type": "resource analysis"
        }
    ],
    "lab": {
        "@id": "/labs/pankbase-consortium/"
    },
    "release_timestamp": "2025-10-29T22:11:21.462322+00:00",
    "schema_version": "8",
    "status": "released",
    "submitted_by": {
        "@id": "/users/5e3038c4-baa5-4589-b3d8-ad2fe634e826/",
        "title": "Ying Sun"
    },
    "submitted_files_timestamp": "2025-09-02T23:03:21.350846+00:00",
    "uuid": "b40b156e-ec74-4cf8-8158-aecec986a5ea"
}