PKBDS5099GVYP

{
    "@context": "/terms/",
    "@id": "/analysis-sets/PKBDS5099GVYP/",
    "@type": [
        "AnalysisSet",
        "FileSet",
        "Item"
    ],
    "accession": "PKBDS5099GVYP",
    "aliases": [
        "kyle-gaulton:2025_geneExpCounts_scRNAseq_Immune"
    ],
    "assay_titles": [],
    "audit": {
        "ERROR": [
            {
                "category": "unexpected input file set",
                "detail": "Analysis set [PKBDS5099GVYP](/analysis-sets/PKBDS5099GVYP/) links to file set(s): [PKBDS1349YHGQ](/analysis-sets/PKBDS1349YHGQ/) in `input_file_sets` that are not represented in the `derived_from` of the file sets of the files in this analysis. The analysis set input files are expected to belong to the input file sets.",
                "level": 60,
                "level_name": "ERROR",
                "name": "audit_input_file_sets_derived_from",
                "path": "/analysis-sets/PKBDS5099GVYP/"
            }
        ],
        "WARNING": [
            {
                "category": "missing samples",
                "detail": "Analysis set [PKBDS5099GVYP](/analysis-sets/PKBDS5099GVYP/) has `input_file_sets`, but no `samples`. With the exception of multiplexed data, analysis sets are expected to specify all the samples associated with its input file sets.",
                "level": 40,
                "level_name": "WARNING",
                "name": "audit_analysis_set_samples",
                "path": "/analysis-sets/PKBDS5099GVYP/"
            },
            {
                "category": "missing derived from",
                "detail": "Analysis set [PKBDS5099GVYP](/analysis-sets/PKBDS5099GVYP/) links to file(s) [PKBFI1487TPPB](/matrix-files/PKBFI1487TPPB/), [PKBFI1849BEQZ](/matrix-files/PKBFI1849BEQZ/), [PKBFI8160DLBR](/tabular-files/PKBFI8160DLBR/), [PKBFI7223HYRQ](/tabular-files/PKBFI7223HYRQ/), [PKBFI8916UNWY](/tabular-files/PKBFI8916UNWY/) that have no `derived_from`. Files in an analysis set are expected to be derived from other files.",
                "level": 40,
                "level_name": "WARNING",
                "name": "audit_input_file_sets_derived_from",
                "path": "/analysis-sets/PKBDS5099GVYP/"
            }
        ]
    },
    "award": {
        "@id": "/awards/U24DK138512-DK138515/",
        "component": "data coordination",
        "title": "A Data and Administrative Coordinating Center for the PanKbase Consortium U24DK138512-DK138515"
    },
    "control_for": [],
    "creation_timestamp": "2025-09-02T20:11:21.557626+00:00",
    "description": "Gene expression counts for pancreatic immune cells from scRNA-seq",
    "file_set_type": "principal analysis",
    "files": [
        {
            "@id": "/matrix-files/PKBFI1487TPPB/",
            "accession": "PKBFI1487TPPB",
            "aliases": [
                "kyle-gaulton:2025_geneExpCounts_scRNAseq_Immune_TPM_per_sample"
            ],
            "content_type": "sparse gene count matrix",
            "creation_timestamp": "2025-11-04T22:10:31.921379+00:00",
            "file_format": "mtx",
            "href": "/matrix-files/PKBFI1487TPPB/@@download/PKBFI1487TPPB.mtx"
        },
        {
            "@id": "/matrix-files/PKBFI1849BEQZ/",
            "accession": "PKBFI1849BEQZ",
            "aliases": [
                "kyle-gaulton:2025_geneExpCounts_scRNAseq_Immune_gex_total_counts"
            ],
            "content_type": "sparse gene count matrix",
            "creation_timestamp": "2025-11-04T22:10:45.691824+00:00",
            "file_format": "mtx",
            "href": "/matrix-files/PKBFI1849BEQZ/@@download/PKBFI1849BEQZ.mtx"
        },
        {
            "@id": "/tabular-files/PKBFI8160DLBR/",
            "accession": "PKBFI8160DLBR",
            "aliases": [
                "kyle-gaulton:2025_geneExpCounts_scRNAseq_Immune_cell_prop"
            ],
            "content_type": "element quantifications",
            "creation_timestamp": "2025-11-04T22:16:04.256439+00:00",
            "file_format": "txt",
            "href": "/tabular-files/PKBFI8160DLBR/@@download/PKBFI8160DLBR.txt.gz"
        },
        {
            "@id": "/tabular-files/PKBFI7223HYRQ/",
            "accession": "PKBFI7223HYRQ",
            "aliases": [
                "kyle-gaulton:2025_geneExpCounts_scRNAseq_Immune_hg38_pseudobulk_rawCounts"
            ],
            "content_type": "element quantifications",
            "creation_timestamp": "2025-09-02T23:04:59.982736+00:00",
            "file_format": "txt",
            "href": "/tabular-files/PKBFI7223HYRQ/@@download/PKBFI7223HYRQ.txt.gz"
        },
        {
            "@id": "/tabular-files/PKBFI8916UNWY/",
            "accession": "PKBFI8916UNWY",
            "aliases": [
                "kyle-gaulton:2025_geneExpCounts_scRNAseq_Immune_hg38_pseudobulk_cpm"
            ],
            "content_type": "element quantifications",
            "creation_timestamp": "2025-09-02T23:04:36.931317+00:00",
            "file_format": "txt",
            "href": "/tabular-files/PKBFI8916UNWY/@@download/PKBFI8916UNWY.txt.gz"
        }
    ],
    "input_file_set_for": [],
    "input_file_sets": [
        {
            "@id": "/analysis-sets/PKBDS1349YHGQ/",
            "accession": "PKBDS1349YHGQ",
            "aliases": [
                "pankbase-consortium:referenceMap_embedding_140scRNAseqDonors_HPAP-IIDP-Prodo_v3.3"
            ],
            "file_set_type": "resource analysis"
        }
    ],
    "lab": {
        "@id": "/labs/pankbase-consortium/",
        "title": "Pankbase Consortium, PanKbase"
    },
    "release_timestamp": "2025-10-29T22:54:01.001643+00:00",
    "schema_version": "8",
    "status": "released",
    "submitted_by": {
        "@id": "/users/5e3038c4-baa5-4589-b3d8-ad2fe634e826/",
        "title": "Ying Sun"
    },
    "submitted_files_timestamp": "2025-09-02T23:04:36.931317+00:00",
    "summary": "principal analysis of scRNA-seq data",
    "uuid": "cae484a1-7f44-4856-bc88-0a0ca26040c4"
}