PKBDS3519RAFX

{
    "@context": "/terms/",
    "@id": "/analysis-sets/PKBDS3519RAFX/",
    "@type": [
        "AnalysisSet",
        "FileSet",
        "Item"
    ],
    "accession": "PKBDS3519RAFX",
    "aliases": [
        "pankbase-consortium:140scRNAseqDonors_HPAP-IIDP-Prodo_v3.3_RUVnormalizedPseudoBulkCounts_DE_beta"
    ],
    "assay_titles": [],
    "audit": {
        "ERROR": [
            {
                "category": "unexpected input file set",
                "detail": "Analysis set [PKBDS3519RAFX](/analysis-sets/PKBDS3519RAFX/) links to file set(s): [PKBDS1349YHGQ](/analysis-sets/PKBDS1349YHGQ/) in `input_file_sets` that are not represented in the `derived_from` of the file sets of the files in this analysis. The analysis set input files are expected to belong to the input file sets.",
                "level": 60,
                "level_name": "ERROR",
                "name": "audit_input_file_sets_derived_from",
                "path": "/analysis-sets/PKBDS3519RAFX/"
            }
        ],
        "INTERNAL_ACTION": [
            {
                "category": "mismatched status",
                "detail": "Released matrix file [PKBFI1695DUZE](/matrix-files/PKBFI1695DUZE/) has in progress subobject analysis step version [83143b51-12da-4721-a652-db80ef6dbdcc](/analysis-step-versions/83143b51-12da-4721-a652-db80ef6dbdcc/).",
                "level": 30,
                "level_name": "INTERNAL_ACTION",
                "name": "audit_item_status",
                "path": "/matrix-files/PKBFI1695DUZE/"
            },
            {
                "category": "mismatched status",
                "detail": "Released tabular file [PKBFI5887OGWB](/tabular-files/PKBFI5887OGWB/) has in progress subobject analysis step version [ce0270c1-3e40-4326-a24e-e142b7caa387](/analysis-step-versions/ce0270c1-3e40-4326-a24e-e142b7caa387/).",
                "level": 30,
                "level_name": "INTERNAL_ACTION",
                "name": "audit_item_status",
                "path": "/tabular-files/PKBFI5887OGWB/"
            }
        ],
        "WARNING": [
            {
                "category": "missing samples",
                "detail": "Analysis set [PKBDS3519RAFX](/analysis-sets/PKBDS3519RAFX/) has `input_file_sets`, but no `samples`. With the exception of multiplexed data, analysis sets are expected to specify all the samples associated with its input file sets.",
                "level": 40,
                "level_name": "WARNING",
                "name": "audit_analysis_set_samples",
                "path": "/analysis-sets/PKBDS3519RAFX/"
            },
            {
                "category": "missing derived from",
                "detail": "Analysis set [PKBDS3519RAFX](/analysis-sets/PKBDS3519RAFX/) links to file(s) [PKBFI1695DUZE](/matrix-files/PKBFI1695DUZE/) that have no `derived_from`. Files in an analysis set are expected to be derived from other files.",
                "level": 40,
                "level_name": "WARNING",
                "name": "audit_input_file_sets_derived_from",
                "path": "/analysis-sets/PKBDS3519RAFX/"
            }
        ]
    },
    "award": {
        "@id": "/awards/U24DK138512/",
        "component": "data coordination",
        "contact_pi": {
            "@id": "/users/860c4750-8d3c-40f5-8f2c-90c5e5d19e88/",
            "title": "Kyle Gaulton"
        },
        "title": "A Data and Administrative Coordinating Center for the PanKbase Consortium"
    },
    "control_for": [],
    "creation_timestamp": "2025-06-17T17:36:08.242349+00:00",
    "description": "RUV-normalized pseudo-bulk counts for differential expression analysis of type B pancreatic cell derived from cells in the single cell RNA-seq browser v3.3",
    "file_set_type": "principal analysis",
    "files": [
        {
            "@id": "/matrix-files/PKBFI1695DUZE/",
            "accession": "PKBFI1695DUZE",
            "aliases": [
                "pankbase-consortium:140scRNAseqDonors_HPAP-IIDP-Prodo_v3.3_RUVnormalizedPseudoBulkCounts_DE_beta_ruvNormCounts"
            ],
            "content_type": "sparse gene count matrix",
            "creation_timestamp": "2025-06-17T18:29:52.627680+00:00",
            "file_format": "mtx",
            "href": "/matrix-files/PKBFI1695DUZE/@@download/PKBFI1695DUZE.mtx"
        },
        {
            "@id": "/tabular-files/PKBFI5887OGWB/",
            "accession": "PKBFI5887OGWB",
            "aliases": [
                "pankbase-consortium:140scRNAseqDonors_HPAP-IIDP-Prodo_v3.3_RUVnormalizedPseudoBulkCounts_DE_beta_DEresult"
            ],
            "content_type": "differential gene expression quantifications",
            "creation_timestamp": "2025-06-17T18:31:22.086282+00:00",
            "file_format": "txt",
            "href": "/tabular-files/PKBFI5887OGWB/@@download/PKBFI5887OGWB.txt.gz"
        }
    ],
    "input_file_set_for": [],
    "input_file_sets": [
        {
            "@id": "/analysis-sets/PKBDS1349YHGQ/",
            "accession": "PKBDS1349YHGQ",
            "aliases": [
                "pankbase-consortium:referenceMap_embedding_140scRNAseqDonors_HPAP-IIDP-Prodo_v3.3"
            ],
            "file_set_type": "principal analysis"
        }
    ],
    "lab": {
        "@id": "/labs/pankbase-consortium/",
        "title": "Pankbase Consortium, PanKbase"
    },
    "notes": "kyle-gaulton:sample_typeBpancreaticCell",
    "release_timestamp": "2025-06-18T18:24:12.566662+00:00",
    "schema_version": "7",
    "status": "released",
    "submitted_by": {
        "@id": "/users/5e3038c4-baa5-4589-b3d8-ad2fe634e826/",
        "title": "Ying Sun"
    },
    "submitted_files_timestamp": "2025-06-17T18:29:52.627680+00:00",
    "summary": "principal analysis of scRNA-seq data",
    "uuid": "677cb667-5a00-46c7-9ee4-7b104c2d89ba"
}