PKBDS3483TGEQ

{
    "@context": "/terms/",
    "@id": "/analysis-sets/PKBDS3483TGEQ/",
    "@type": [
        "AnalysisSet",
        "FileSet",
        "Item"
    ],
    "accession": "PKBDS3483TGEQ",
    "aliases": [
        "pankbase-consortium:140scRNAseqDonors_HPAP-IIDP-Prodo_v3.3_RUVnormalizedPseudoBulkCounts_DE_activeStellate"
    ],
    "assay_titles": [],
    "audit": {
        "ERROR": [
            {
                "category": "unexpected input file set",
                "detail": "Analysis set [PKBDS3483TGEQ](/analysis-sets/PKBDS3483TGEQ/) links to file set(s): [PKBDS1349YHGQ](/analysis-sets/PKBDS1349YHGQ/) in `input_file_sets` that are not represented in the `derived_from` of the file sets of the files in this analysis. The analysis set input files are expected to belong to the input file sets.",
                "level": 60,
                "level_name": "ERROR",
                "name": "audit_input_file_sets_derived_from",
                "path": "/analysis-sets/PKBDS3483TGEQ/"
            }
        ],
        "INTERNAL_ACTION": [
            {
                "category": "mismatched status",
                "detail": "Released tabular file [PKBFI6741PPHZ](/tabular-files/PKBFI6741PPHZ/) has in progress subobject analysis step version [ce0270c1-3e40-4326-a24e-e142b7caa387](/analysis-step-versions/ce0270c1-3e40-4326-a24e-e142b7caa387/).",
                "level": 30,
                "level_name": "INTERNAL_ACTION",
                "name": "audit_item_status",
                "path": "/tabular-files/PKBFI6741PPHZ/"
            },
            {
                "category": "mismatched status",
                "detail": "Released matrix file [PKBFI3988BVSI](/matrix-files/PKBFI3988BVSI/) has in progress subobject analysis step version [83143b51-12da-4721-a652-db80ef6dbdcc](/analysis-step-versions/83143b51-12da-4721-a652-db80ef6dbdcc/).",
                "level": 30,
                "level_name": "INTERNAL_ACTION",
                "name": "audit_item_status",
                "path": "/matrix-files/PKBFI3988BVSI/"
            }
        ],
        "WARNING": [
            {
                "category": "missing samples",
                "detail": "Analysis set [PKBDS3483TGEQ](/analysis-sets/PKBDS3483TGEQ/) has `input_file_sets`, but no `samples`. With the exception of multiplexed data, analysis sets are expected to specify all the samples associated with its input file sets.",
                "level": 40,
                "level_name": "WARNING",
                "name": "audit_analysis_set_samples",
                "path": "/analysis-sets/PKBDS3483TGEQ/"
            },
            {
                "category": "missing derived from",
                "detail": "Analysis set [PKBDS3483TGEQ](/analysis-sets/PKBDS3483TGEQ/) links to file(s) [PKBFI3988BVSI](/matrix-files/PKBFI3988BVSI/) that have no `derived_from`. Files in an analysis set are expected to be derived from other files.",
                "level": 40,
                "level_name": "WARNING",
                "name": "audit_input_file_sets_derived_from",
                "path": "/analysis-sets/PKBDS3483TGEQ/"
            }
        ]
    },
    "award": {
        "@id": "/awards/U24DK138512/",
        "component": "data coordination",
        "contact_pi": {
            "@id": "/users/860c4750-8d3c-40f5-8f2c-90c5e5d19e88/",
            "title": "Kyle Gaulton"
        },
        "title": "A Data and Administrative Coordinating Center for the PanKbase Consortium"
    },
    "control_for": [],
    "creation_timestamp": "2025-06-17T17:36:32.198416+00:00",
    "description": "RUV-normalized pseudo-bulk counts for differential expression analysis of pancreatic stellate cell derived from cells in the single cell RNA-seq browser v3.3",
    "file_set_type": "principal analysis",
    "files": [
        {
            "@id": "/matrix-files/PKBFI3988BVSI/",
            "accession": "PKBFI3988BVSI",
            "aliases": [
                "pankbase-consortium:140scRNAseqDonors_HPAP-IIDP-Prodo_v3.3_RUVnormalizedPseudoBulkCounts_DE_activeStellate_ruvNormCounts"
            ],
            "content_type": "sparse gene count matrix",
            "creation_timestamp": "2025-06-17T18:29:54.994460+00:00",
            "file_format": "mtx",
            "href": "/matrix-files/PKBFI3988BVSI/@@download/PKBFI3988BVSI.mtx"
        },
        {
            "@id": "/tabular-files/PKBFI6741PPHZ/",
            "accession": "PKBFI6741PPHZ",
            "aliases": [
                "pankbase-consortium:140scRNAseqDonors_HPAP-IIDP-Prodo_v3.3_RUVnormalizedPseudoBulkCounts_DE_activeStellate_DEresult"
            ],
            "content_type": "differential gene expression quantifications",
            "creation_timestamp": "2025-06-17T18:31:24.760927+00:00",
            "file_format": "txt",
            "href": "/tabular-files/PKBFI6741PPHZ/@@download/PKBFI6741PPHZ.txt.gz"
        }
    ],
    "input_file_set_for": [],
    "input_file_sets": [
        {
            "@id": "/analysis-sets/PKBDS1349YHGQ/",
            "accession": "PKBDS1349YHGQ",
            "aliases": [
                "pankbase-consortium:referenceMap_embedding_140scRNAseqDonors_HPAP-IIDP-Prodo_v3.3"
            ],
            "file_set_type": "principal analysis"
        }
    ],
    "lab": {
        "@id": "/labs/pankbase-consortium/",
        "title": "Pankbase Consortium, PanKbase"
    },
    "notes": "kyle-gaulton:sample_pancreaticStellateCell",
    "release_timestamp": "2025-06-18T18:22:56.349177+00:00",
    "schema_version": "7",
    "status": "released",
    "submitted_by": {
        "@id": "/users/5e3038c4-baa5-4589-b3d8-ad2fe634e826/",
        "title": "Ying Sun"
    },
    "submitted_files_timestamp": "2025-06-17T18:29:54.994460+00:00",
    "summary": "principal analysis of scRNA-seq data",
    "uuid": "7bf88b85-c474-48de-98c3-baf0439a75bb"
}