PKBDS1406HPKF

{
    "@context": "/terms/",
    "@id": "/analysis-sets/PKBDS1406HPKF/",
    "@type": [
        "AnalysisSet",
        "FileSet",
        "Item"
    ],
    "accession": "PKBDS1406HPKF",
    "aliases": [
        "kyle-gaulton:2025_geneExpCounts_scRNAseq_Beta"
    ],
    "assay_titles": [],
    "audit": {
        "ERROR": [
            {
                "category": "unexpected input file set",
                "detail": "Analysis set [PKBDS1406HPKF](/analysis-sets/PKBDS1406HPKF/) links to file set(s): [PKBDS1349YHGQ](/analysis-sets/PKBDS1349YHGQ/) in `input_file_sets` that are not represented in the `derived_from` of the file sets of the files in this analysis. The analysis set input files are expected to belong to the input file sets.",
                "level": 60,
                "level_name": "ERROR",
                "name": "audit_input_file_sets_derived_from",
                "path": "/analysis-sets/PKBDS1406HPKF/"
            }
        ],
        "WARNING": [
            {
                "category": "missing samples",
                "detail": "Analysis set [PKBDS1406HPKF](/analysis-sets/PKBDS1406HPKF/) has `input_file_sets`, but no `samples`. With the exception of multiplexed data, analysis sets are expected to specify all the samples associated with its input file sets.",
                "level": 40,
                "level_name": "WARNING",
                "name": "audit_analysis_set_samples",
                "path": "/analysis-sets/PKBDS1406HPKF/"
            },
            {
                "category": "missing derived from",
                "detail": "Analysis set [PKBDS1406HPKF](/analysis-sets/PKBDS1406HPKF/) links to file(s) [PKBFI4206VNOS](/matrix-files/PKBFI4206VNOS/), [PKBFI7932KYQP](/matrix-files/PKBFI7932KYQP/), [PKBFI9683CCZE](/tabular-files/PKBFI9683CCZE/), [PKBFI9865TVEO](/tabular-files/PKBFI9865TVEO/), [PKBFI4780OSVU](/tabular-files/PKBFI4780OSVU/) that have no `derived_from`. Files in an analysis set are expected to be derived from other files.",
                "level": 40,
                "level_name": "WARNING",
                "name": "audit_input_file_sets_derived_from",
                "path": "/analysis-sets/PKBDS1406HPKF/"
            }
        ]
    },
    "award": {
        "@id": "/awards/U24DK138512-DK138515/",
        "component": "data coordination",
        "title": "A Data and Administrative Coordinating Center for the PanKbase Consortium U24DK138512-DK138515"
    },
    "control_for": [],
    "creation_timestamp": "2025-09-02T20:10:45.894187+00:00",
    "description": "Gene expression counts for pancreatic beta cells from scRNA-seq",
    "file_set_type": "principal analysis",
    "files": [
        {
            "@id": "/matrix-files/PKBFI4206VNOS/",
            "accession": "PKBFI4206VNOS",
            "aliases": [
                "kyle-gaulton:2025_geneExpCounts_scRNAseq_Beta_TPM_per_sample"
            ],
            "content_type": "sparse gene count matrix",
            "creation_timestamp": "2025-11-04T22:10:27.124118+00:00",
            "file_format": "mtx",
            "href": "/matrix-files/PKBFI4206VNOS/@@download/PKBFI4206VNOS.mtx"
        },
        {
            "@id": "/matrix-files/PKBFI7932KYQP/",
            "accession": "PKBFI7932KYQP",
            "aliases": [
                "kyle-gaulton:2025_geneExpCounts_scRNAseq_Beta_gex_total_counts"
            ],
            "content_type": "sparse gene count matrix",
            "creation_timestamp": "2025-11-04T22:10:40.220332+00:00",
            "file_format": "mtx",
            "href": "/matrix-files/PKBFI7932KYQP/@@download/PKBFI7932KYQP.mtx"
        },
        {
            "@id": "/tabular-files/PKBFI9683CCZE/",
            "accession": "PKBFI9683CCZE",
            "aliases": [
                "kyle-gaulton:2025_geneExpCounts_scRNAseq_Beta_cell_prop"
            ],
            "content_type": "element quantifications",
            "creation_timestamp": "2025-11-04T22:15:58.863598+00:00",
            "file_format": "txt",
            "href": "/tabular-files/PKBFI9683CCZE/@@download/PKBFI9683CCZE.txt.gz"
        },
        {
            "@id": "/tabular-files/PKBFI9865TVEO/",
            "accession": "PKBFI9865TVEO",
            "aliases": [
                "kyle-gaulton:2025_geneExpCounts_scRNAseq_Beta_hg38_pseudobulk_cpm"
            ],
            "content_type": "element quantifications",
            "creation_timestamp": "2025-09-02T23:04:32.474670+00:00",
            "file_format": "txt",
            "href": "/tabular-files/PKBFI9865TVEO/@@download/PKBFI9865TVEO.txt.gz"
        },
        {
            "@id": "/tabular-files/PKBFI4780OSVU/",
            "accession": "PKBFI4780OSVU",
            "aliases": [
                "kyle-gaulton:2025_geneExpCounts_scRNAseq_Beta_hg38_pseudobulk_rawCounts"
            ],
            "content_type": "element quantifications",
            "creation_timestamp": "2025-09-02T23:04:55.033511+00:00",
            "file_format": "txt",
            "href": "/tabular-files/PKBFI4780OSVU/@@download/PKBFI4780OSVU.txt.gz"
        }
    ],
    "input_file_set_for": [],
    "input_file_sets": [
        {
            "@id": "/analysis-sets/PKBDS1349YHGQ/",
            "accession": "PKBDS1349YHGQ",
            "aliases": [
                "pankbase-consortium:referenceMap_embedding_140scRNAseqDonors_HPAP-IIDP-Prodo_v3.3"
            ],
            "file_set_type": "resource analysis"
        }
    ],
    "lab": {
        "@id": "/labs/pankbase-consortium/",
        "title": "Pankbase Consortium, PanKbase"
    },
    "release_timestamp": "2025-10-29T22:53:33.142984+00:00",
    "schema_version": "8",
    "status": "released",
    "submitted_by": {
        "@id": "/users/5e3038c4-baa5-4589-b3d8-ad2fe634e826/",
        "title": "Ying Sun"
    },
    "submitted_files_timestamp": "2025-09-02T23:04:32.474670+00:00",
    "summary": "principal analysis of scRNA-seq data",
    "uuid": "549bccd9-7732-4104-b80e-96cfd5ac4be0"
}