PKBDS0107HAST
{
"@context": "/terms/",
"@id": "/analysis-sets/PKBDS0107HAST/",
"@type": [
"AnalysisSet",
"FileSet",
"Item"
],
"accession": "PKBDS0107HAST",
"aliases": [
"pankbase-consortium:EndoC-bH1_HEK293_emptyVector_GSE185430_AnalysisSet"
],
"assay_titles": [
"RNA-seq"
],
"audit": {
"ERROR": [
{
"category": "unexpected input file set",
"detail": "Analysis set [PKBDS0107HAST](/analysis-sets/PKBDS0107HAST/) links to file set(s): [PKBDS4793QOSO](/measurement-sets/PKBDS4793QOSO/) in `input_file_sets` that are not represented in the `derived_from` of the file sets of the files in this analysis. The analysis set input files are expected to belong to the input file sets.",
"level": 60,
"level_name": "ERROR",
"name": "audit_input_file_sets_derived_from",
"path": "/analysis-sets/PKBDS0107HAST/"
}
],
"INTERNAL_ACTION": [
{
"category": "mismatched status",
"detail": "Released human beta cell lines [PKBSM3533XIDS](/human-beta-cell-line/PKBSM3533XIDS/) has in progress subobject source [univercell-biosolutions](/sources/univercell-biosolutions/).",
"level": 30,
"level_name": "INTERNAL_ACTION",
"name": "audit_item_status",
"path": "/human-beta-cell-line/PKBSM3533XIDS/"
}
],
"WARNING": [
{
"category": "incorrect classifications format",
"detail": "Human beta cell line [PKBSM3533XIDS](/human-beta-cell-line/PKBSM3533XIDS/) has `classifications` ['human beta cell line'] but should be [\"cell line\"]. Human beta cell lines are expected to have classifications as an array.",
"level": 40,
"level_name": "WARNING",
"name": "audit_classifications_format_check",
"path": "/human-beta-cell-line/PKBSM3533XIDS/"
},
{
"category": "missing derived from",
"detail": "Analysis set [PKBDS0107HAST](/analysis-sets/PKBDS0107HAST/) links to file(s) [PKBFI5728TGLR](/alignment-files/PKBFI5728TGLR/), [PKBFI6191YSTZ](/alignment-files/PKBFI6191YSTZ/), [PKBFI6694YZTX](/alignment-files/PKBFI6694YZTX/), [PKBFI6162HYZE](/alignment-files/PKBFI6162HYZE/), [PKBFI1499QRWT](/alignment-files/PKBFI1499QRWT/), [PKBFI6111XAYP](/alignment-files/PKBFI6111XAYP/), [PKBFI0579GRBI](/alignment-files/PKBFI0579GRBI/), [PKBFI7466ZNIX](/alignment-files/PKBFI7466ZNIX/), [PKBFI3746EAJO](/alignment-files/PKBFI3746EAJO/), [PKBFI9858SVJZ](/alignment-files/PKBFI9858SVJZ/), [PKBFI7444BIAQ](/alignment-files/PKBFI7444BIAQ/), [PKBFI0124BPDC](/alignment-files/PKBFI0124BPDC/), [PKBFI6752MZSY](/tabular-files/PKBFI6752MZSY/), [PKBFI6756XLTI](/alignment-files/PKBFI6756XLTI/), [PKBFI4160YDPA](/alignment-files/PKBFI4160YDPA/), [PKBFI3596MXWX](/alignment-files/PKBFI3596MXWX/), [PKBFI2188IQRJ](/alignment-files/PKBFI2188IQRJ/), [PKBFI8571HBLC](/tabular-files/PKBFI8571HBLC/), [PKBFI2596PUVV](/alignment-files/PKBFI2596PUVV/), [PKBFI4518BFHO](/alignment-files/PKBFI4518BFHO/), [PKBFI2053KSKC](/tabular-files/PKBFI2053KSKC/), [PKBFI4387FBID](/tabular-files/PKBFI4387FBID/), [PKBFI5691KFWU](/tabular-files/PKBFI5691KFWU/), [PKBFI1019HQGE](/tabular-files/PKBFI1019HQGE/), [PKBFI4733XIDX](/tabular-files/PKBFI4733XIDX/), [PKBFI2104BASB](/tabular-files/PKBFI2104BASB/), [PKBFI4530JMHZ](/tabular-files/PKBFI4530JMHZ/) that have no `derived_from`. Files in an analysis set are expected to be derived from other files.",
"level": 40,
"level_name": "WARNING",
"name": "audit_input_file_sets_derived_from",
"path": "/analysis-sets/PKBDS0107HAST/"
},
{
"category": "missing tier 1 field",
"detail": "Human donor [PKBDO8293TLPA](/human-donors/PKBDO8293TLPA/) is missing tier 1 field `sex`.",
"level": 40,
"level_name": "WARNING",
"name": "audit_tier1_fields",
"path": "/human-donors/PKBDO8293TLPA/"
},
{
"category": "missing tier 1 field",
"detail": "Human donor [PKBDO8293TLPA](/human-donors/PKBDO8293TLPA/) is missing tier 1 field `bmi`.",
"level": 40,
"level_name": "WARNING",
"name": "audit_tier1_fields",
"path": "/human-donors/PKBDO8293TLPA/"
},
{
"category": "missing tier 1 field",
"detail": "Human donor [PKBDO8293TLPA](/human-donors/PKBDO8293TLPA/) is missing tier 1 field `diabetes_status_description`.",
"level": 40,
"level_name": "WARNING",
"name": "audit_tier1_fields",
"path": "/human-donors/PKBDO8293TLPA/"
},
{
"category": "missing tier 2 field",
"detail": "Human donor [PKBDO8293TLPA](/human-donors/PKBDO8293TLPA/) is missing tier 2 field `rrid`.",
"level": 40,
"level_name": "WARNING",
"name": "audit_tier2_fields",
"path": "/human-donors/PKBDO8293TLPA/"
},
{
"category": "missing tier 2 field",
"detail": "Human donor [PKBDO8293TLPA](/human-donors/PKBDO8293TLPA/) is missing tier 2 field `ethnicities`.",
"level": 40,
"level_name": "WARNING",
"name": "audit_tier2_fields",
"path": "/human-donors/PKBDO8293TLPA/"
},
{
"category": "missing tier 2 field",
"detail": "Human donor [PKBDO8293TLPA](/human-donors/PKBDO8293TLPA/) is missing tier 2 field `hba1c`.",
"level": 40,
"level_name": "WARNING",
"name": "audit_tier2_fields",
"path": "/human-donors/PKBDO8293TLPA/"
},
{
"category": "missing tier 2 field",
"detail": "Human donor [PKBDO8293TLPA](/human-donors/PKBDO8293TLPA/) is missing tier 2 field `glucose_loweing_theraphy`.",
"level": 40,
"level_name": "WARNING",
"name": "audit_tier2_fields",
"path": "/human-donors/PKBDO8293TLPA/"
},
{
"category": "missing tier 2 field",
"detail": "Human donor [PKBDO8293TLPA](/human-donors/PKBDO8293TLPA/) is missing tier 2 field `hospital_stay`.",
"level": 40,
"level_name": "WARNING",
"name": "audit_tier2_fields",
"path": "/human-donors/PKBDO8293TLPA/"
},
{
"category": "missing tier 2 field",
"detail": "Human donor [PKBDO8293TLPA](/human-donors/PKBDO8293TLPA/) is missing tier 2 field `donation_type`.",
"level": 40,
"level_name": "WARNING",
"name": "audit_tier2_fields",
"path": "/human-donors/PKBDO8293TLPA/"
},
{
"category": "missing tier 2 field",
"detail": "Human donor [PKBDO8293TLPA](/human-donors/PKBDO8293TLPA/) is missing tier 2 field `cause_of_death`.",
"level": 40,
"level_name": "WARNING",
"name": "audit_tier2_fields",
"path": "/human-donors/PKBDO8293TLPA/"
},
{
"category": "missing tier 3 field",
"detail": "Human donor [PKBDO8293TLPA](/human-donors/PKBDO8293TLPA/) is missing tier 3 field `dbxrefs`.",
"level": 40,
"level_name": "WARNING",
"name": "audit_tier3_fields",
"path": "/human-donors/PKBDO8293TLPA/"
},
{
"category": "missing tier 3 field",
"detail": "Human donor [PKBDO8293TLPA](/human-donors/PKBDO8293TLPA/) is missing tier 3 field `phenotypic_features`.",
"level": 40,
"level_name": "WARNING",
"name": "audit_tier3_fields",
"path": "/human-donors/PKBDO8293TLPA/"
},
{
"category": "missing tier 3 field",
"detail": "Human donor [PKBDO8293TLPA](/human-donors/PKBDO8293TLPA/) is missing tier 3 field `family_history_of_diabetes`.",
"level": 40,
"level_name": "WARNING",
"name": "audit_tier3_fields",
"path": "/human-donors/PKBDO8293TLPA/"
},
{
"category": "missing tier 3 field",
"detail": "Human donor [PKBDO8293TLPA](/human-donors/PKBDO8293TLPA/) is missing tier 3 field `family_history_of_diabetes_relationship`.",
"level": 40,
"level_name": "WARNING",
"name": "audit_tier3_fields",
"path": "/human-donors/PKBDO8293TLPA/"
},
{
"category": "missing tier 3 field",
"detail": "Human donor [PKBDO8293TLPA](/human-donors/PKBDO8293TLPA/) is missing tier 3 field `genetic_ethnicities`.",
"level": 40,
"level_name": "WARNING",
"name": "audit_tier3_fields",
"path": "/human-donors/PKBDO8293TLPA/"
},
{
"category": "missing tier 3 field",
"detail": "Human donor [PKBDO8293TLPA](/human-donors/PKBDO8293TLPA/) is missing tier 3 field `genetic_sex`.",
"level": 40,
"level_name": "WARNING",
"name": "audit_tier3_fields",
"path": "/human-donors/PKBDO8293TLPA/"
},
{
"category": "missing tier 3 field",
"detail": "Human donor [PKBDO8293TLPA](/human-donors/PKBDO8293TLPA/) is missing tier 3 field `diabetes_duration`.",
"level": 40,
"level_name": "WARNING",
"name": "audit_tier3_fields",
"path": "/human-donors/PKBDO8293TLPA/"
},
{
"category": "missing tier 3 field",
"detail": "Human donor [PKBDO8293TLPA](/human-donors/PKBDO8293TLPA/) is missing tier 3 field `c_peptide`.",
"level": 40,
"level_name": "WARNING",
"name": "audit_tier3_fields",
"path": "/human-donors/PKBDO8293TLPA/"
},
{
"category": "missing tier 3 field",
"detail": "Human donor [PKBDO8293TLPA](/human-donors/PKBDO8293TLPA/) is missing tier 3 field `aab_gada`.",
"level": 40,
"level_name": "WARNING",
"name": "audit_tier3_fields",
"path": "/human-donors/PKBDO8293TLPA/"
},
{
"category": "missing tier 3 field",
"detail": "Human donor [PKBDO8293TLPA](/human-donors/PKBDO8293TLPA/) is missing tier 3 field `aab_gada_assay`.",
"level": 40,
"level_name": "WARNING",
"name": "audit_tier3_fields",
"path": "/human-donors/PKBDO8293TLPA/"
},
{
"category": "missing tier 3 field",
"detail": "Human donor [PKBDO8293TLPA](/human-donors/PKBDO8293TLPA/) is missing tier 3 field `aab_gada_value`.",
"level": 40,
"level_name": "WARNING",
"name": "audit_tier3_fields",
"path": "/human-donors/PKBDO8293TLPA/"
},
{
"category": "missing tier 3 field",
"detail": "Human donor [PKBDO8293TLPA](/human-donors/PKBDO8293TLPA/) is missing tier 3 field `aab_ia2`.",
"level": 40,
"level_name": "WARNING",
"name": "audit_tier3_fields",
"path": "/human-donors/PKBDO8293TLPA/"
},
{
"category": "missing tier 3 field",
"detail": "Human donor [PKBDO8293TLPA](/human-donors/PKBDO8293TLPA/) is missing tier 3 field `aab_ia2_assay`.",
"level": 40,
"level_name": "WARNING",
"name": "audit_tier3_fields",
"path": "/human-donors/PKBDO8293TLPA/"
},
{
"category": "missing tier 3 field",
"detail": "Human donor [PKBDO8293TLPA](/human-donors/PKBDO8293TLPA/) is missing tier 3 field `aab_ia2_value`.",
"level": 40,
"level_name": "WARNING",
"name": "audit_tier3_fields",
"path": "/human-donors/PKBDO8293TLPA/"
},
{
"category": "missing tier 3 field",
"detail": "Human donor [PKBDO8293TLPA](/human-donors/PKBDO8293TLPA/) is missing tier 3 field `aab_iaa`.",
"level": 40,
"level_name": "WARNING",
"name": "audit_tier3_fields",
"path": "/human-donors/PKBDO8293TLPA/"
},
{
"category": "missing tier 3 field",
"detail": "Human donor [PKBDO8293TLPA](/human-donors/PKBDO8293TLPA/) is missing tier 3 field `aab_iaa_assay`.",
"level": 40,
"level_name": "WARNING",
"name": "audit_tier3_fields",
"path": "/human-donors/PKBDO8293TLPA/"
},
{
"category": "missing tier 3 field",
"detail": "Human donor [PKBDO8293TLPA](/human-donors/PKBDO8293TLPA/) is missing tier 3 field `aab_iaa_value`.",
"level": 40,
"level_name": "WARNING",
"name": "audit_tier3_fields",
"path": "/human-donors/PKBDO8293TLPA/"
},
{
"category": "missing tier 3 field",
"detail": "Human donor [PKBDO8293TLPA](/human-donors/PKBDO8293TLPA/) is missing tier 3 field `aab_znt8`.",
"level": 40,
"level_name": "WARNING",
"name": "audit_tier3_fields",
"path": "/human-donors/PKBDO8293TLPA/"
},
{
"category": "missing tier 3 field",
"detail": "Human donor [PKBDO8293TLPA](/human-donors/PKBDO8293TLPA/) is missing tier 3 field `aab_znt8_assay`.",
"level": 40,
"level_name": "WARNING",
"name": "audit_tier3_fields",
"path": "/human-donors/PKBDO8293TLPA/"
},
{
"category": "missing tier 3 field",
"detail": "Human donor [PKBDO8293TLPA](/human-donors/PKBDO8293TLPA/) is missing tier 3 field `aab_znt8_value`.",
"level": 40,
"level_name": "WARNING",
"name": "audit_tier3_fields",
"path": "/human-donors/PKBDO8293TLPA/"
},
{
"category": "missing tier 3 field",
"detail": "Human donor [PKBDO8293TLPA](/human-donors/PKBDO8293TLPA/) is missing tier 3 field `hla_typing`.",
"level": 40,
"level_name": "WARNING",
"name": "audit_tier3_fields",
"path": "/human-donors/PKBDO8293TLPA/"
},
{
"category": "missing tier 3 field",
"detail": "Human donor [PKBDO8293TLPA](/human-donors/PKBDO8293TLPA/) is missing tier 3 field `other_theraphy`.",
"level": 40,
"level_name": "WARNING",
"name": "audit_tier3_fields",
"path": "/human-donors/PKBDO8293TLPA/"
},
{
"category": "missing tier 3 field",
"detail": "Human donor [PKBDO8293TLPA](/human-donors/PKBDO8293TLPA/) is missing tier 3 field `publication_identifiers`.",
"level": 40,
"level_name": "WARNING",
"name": "audit_tier3_fields",
"path": "/human-donors/PKBDO8293TLPA/"
},
{
"category": "missing tier 3 field",
"detail": "Human donor [PKBDO8293TLPA](/human-donors/PKBDO8293TLPA/) is missing tier 3 field `collections`.",
"level": 40,
"level_name": "WARNING",
"name": "audit_tier3_fields",
"path": "/human-donors/PKBDO8293TLPA/"
},
{
"category": "missing tier 3 field",
"detail": "Human donor [PKBDO8293TLPA](/human-donors/PKBDO8293TLPA/) is missing tier 3 field `pancreas_tissue_available`.",
"level": 40,
"level_name": "WARNING",
"name": "audit_tier3_fields",
"path": "/human-donors/PKBDO8293TLPA/"
},
{
"category": "missing tier 3 field",
"detail": "Human donor [PKBDO8293TLPA](/human-donors/PKBDO8293TLPA/) is missing tier 3 field `documents`.",
"level": 40,
"level_name": "WARNING",
"name": "audit_tier3_fields",
"path": "/human-donors/PKBDO8293TLPA/"
},
{
"category": "missing tier 3 field",
"detail": "Human donor [PKBDO8293TLPA](/human-donors/PKBDO8293TLPA/) is missing tier 3 field `url`.",
"level": 40,
"level_name": "WARNING",
"name": "audit_tier3_fields",
"path": "/human-donors/PKBDO8293TLPA/"
},
{
"category": "missing tier 3 field",
"detail": "Human donor [PKBDO8293TLPA](/human-donors/PKBDO8293TLPA/) is missing tier 3 field `derived_diabetes_status`.",
"level": 40,
"level_name": "WARNING",
"name": "audit_tier3_fields",
"path": "/human-donors/PKBDO8293TLPA/"
},
{
"category": "missing tier 3 field",
"detail": "Human donor [PKBDO8293TLPA](/human-donors/PKBDO8293TLPA/) is missing tier 3 field `data_available`.",
"level": 40,
"level_name": "WARNING",
"name": "audit_tier3_fields",
"path": "/human-donors/PKBDO8293TLPA/"
},
{
"category": "missing tier 3 field",
"detail": "Human donor [PKBDO8293TLPA](/human-donors/PKBDO8293TLPA/) is missing tier 3 field `related_donors`.",
"level": 40,
"level_name": "WARNING",
"name": "audit_tier3_fields",
"path": "/human-donors/PKBDO8293TLPA/"
}
]
},
"award": {
"@id": "/awards/U24DK138512-DK138515/",
"component": "data coordination",
"title": "A Data and Administrative Coordinating Center for the PanKbase Consortium U24DK138512-DK138515"
},
"control_for": [],
"creation_timestamp": "2025-10-30T18:43:49.848264+00:00",
"description": "Analysis set of EndoC-bH1 cells treated with conditioned media from HEK293 cells expressing empty vector (EV) from GSE185430",
"donors": [
{
"@id": "/human-donors/PKBDO8293TLPA/",
"accession": "PKBDO8293TLPA",
"aliases": [
"pankbase-consortium:EndoC_donor"
],
"status": "released",
"taxa": "Homo sapiens"
}
],
"file_set_type": "intermediate analysis",
"files": [
{
"@id": "/alignment-files/PKBFI5728TGLR/",
"accession": "PKBFI5728TGLR",
"aliases": [
"pankbase-consortium:EndoC-bH1_HEK293_emptyVector_GSE185430_AnalysisSet.SRR16217252.Aligned.toTranscriptome.out.bam"
],
"content_type": "transcriptome alignments",
"creation_timestamp": "2026-01-06T00:56:17.880664+00:00",
"file_format": "bam",
"href": "/alignment-files/PKBFI5728TGLR/@@download/PKBFI5728TGLR.bam"
},
{
"@id": "/alignment-files/PKBFI6191YSTZ/",
"accession": "PKBFI6191YSTZ",
"aliases": [
"pankbase-consortium:EndoC-bH1_HEK293_emptyVector_GSE185430_AnalysisSet.SRR16217261.Aligned.toTranscriptome.out.bam"
],
"content_type": "transcriptome alignments",
"creation_timestamp": "2026-01-06T00:56:30.138777+00:00",
"file_format": "bam",
"href": "/alignment-files/PKBFI6191YSTZ/@@download/PKBFI6191YSTZ.bam"
},
{
"@id": "/alignment-files/PKBFI6694YZTX/",
"accession": "PKBFI6694YZTX",
"aliases": [
"pankbase-consortium:EndoC-bH1_HEK293_emptyVector_GSE185430_AnalysisSet.SRR16217253.Aligned.sortedByCoord.out.bam"
],
"content_type": "alignments",
"creation_timestamp": "2026-01-06T00:56:20.858876+00:00",
"file_format": "bam",
"href": "/alignment-files/PKBFI6694YZTX/@@download/PKBFI6694YZTX.bam"
},
{
"@id": "/alignment-files/PKBFI6162HYZE/",
"accession": "PKBFI6162HYZE",
"aliases": [
"pankbase-consortium:EndoC-bH1_HEK293_emptyVector_GSE185430_AnalysisSet.SRR16217253.Aligned.toTranscriptome.out.bam"
],
"content_type": "transcriptome alignments",
"creation_timestamp": "2026-01-06T00:56:22.268298+00:00",
"file_format": "bam",
"href": "/alignment-files/PKBFI6162HYZE/@@download/PKBFI6162HYZE.bam"
},
{
"@id": "/alignment-files/PKBFI3616CSAW/",
"accession": "PKBFI3616CSAW",
"aliases": [
"pankbase-consortium:EndoC-bH1_HEK293_emptyVector_GSE185430_AnalysisSet.SRR16217253.Aligned.sortedByCoord.out.md.bam"
],
"content_type": "alignments",
"creation_timestamp": "2026-01-06T00:56:23.471300+00:00",
"file_format": "bam",
"href": "/alignment-files/PKBFI3616CSAW/@@download/PKBFI3616CSAW.bam"
},
{
"@id": "/alignment-files/PKBFI3322NZIZ/",
"accession": "PKBFI3322NZIZ",
"aliases": [
"pankbase-consortium:EndoC-bH1_HEK293_emptyVector_GSE185430_AnalysisSet.SRR16217254.Aligned.sortedByCoord.out.md.bam"
],
"content_type": "alignments",
"creation_timestamp": "2026-01-06T00:56:27.035654+00:00",
"file_format": "bam",
"href": "/alignment-files/PKBFI3322NZIZ/@@download/PKBFI3322NZIZ.bam"
},
{
"@id": "/alignment-files/PKBFI1499QRWT/",
"accession": "PKBFI1499QRWT",
"aliases": [
"pankbase-consortium:EndoC-bH1_HEK293_emptyVector_GSE185430_AnalysisSet.SRR16217263.Aligned.toTranscriptome.out.bam"
],
"content_type": "transcriptome alignments",
"creation_timestamp": "2026-01-06T00:56:39.397593+00:00",
"file_format": "bam",
"href": "/alignment-files/PKBFI1499QRWT/@@download/PKBFI1499QRWT.bam"
},
{
"@id": "/alignment-files/PKBFI6111XAYP/",
"accession": "PKBFI6111XAYP",
"aliases": [
"pankbase-consortium:EndoC-bH1_HEK293_emptyVector_GSE185430_AnalysisSet.SRR16217242.Aligned.sortedByCoord.out.bam"
],
"content_type": "alignments",
"creation_timestamp": "2026-01-06T00:56:08.335767+00:00",
"file_format": "bam",
"href": "/alignment-files/PKBFI6111XAYP/@@download/PKBFI6111XAYP.bam"
},
{
"@id": "/alignment-files/PKBFI5470NSEQ/",
"accession": "PKBFI5470NSEQ",
"aliases": [
"pankbase-consortium:EndoC-bH1_HEK293_emptyVector_GSE185430_AnalysisSet.SRR16217241.Aligned.sortedByCoord.out.md.bam"
],
"content_type": "alignments",
"creation_timestamp": "2026-01-06T00:56:06.941235+00:00",
"file_format": "bam",
"href": "/alignment-files/PKBFI5470NSEQ/@@download/PKBFI5470NSEQ.bam"
},
{
"@id": "/alignment-files/PKBFI7461PRWT/",
"accession": "PKBFI7461PRWT",
"aliases": [
"pankbase-consortium:EndoC-bH1_HEK293_emptyVector_GSE185430_AnalysisSet.SRR16217242.Aligned.sortedByCoord.out.md.bam"
],
"content_type": "alignments",
"creation_timestamp": "2026-01-06T00:56:11.628033+00:00",
"file_format": "bam",
"href": "/alignment-files/PKBFI7461PRWT/@@download/PKBFI7461PRWT.bam"
},
{
"@id": "/alignment-files/PKBFI0579GRBI/",
"accession": "PKBFI0579GRBI",
"aliases": [
"pankbase-consortium:EndoC-bH1_HEK293_emptyVector_GSE185430_AnalysisSet.SRR16217252.Aligned.sortedByCoord.out.bam"
],
"content_type": "alignments",
"creation_timestamp": "2026-01-06T00:56:16.626005+00:00",
"file_format": "bam",
"href": "/alignment-files/PKBFI0579GRBI/@@download/PKBFI0579GRBI.bam"
},
{
"@id": "/alignment-files/PKBFI8155QMHI/",
"accession": "PKBFI8155QMHI",
"aliases": [
"pankbase-consortium:EndoC-bH1_HEK293_emptyVector_GSE185430_AnalysisSet.SRR16217263.Aligned.sortedByCoord.out.md.bam"
],
"content_type": "alignments",
"creation_timestamp": "2026-01-06T00:56:40.675538+00:00",
"file_format": "bam",
"href": "/alignment-files/PKBFI8155QMHI/@@download/PKBFI8155QMHI.bam"
},
{
"@id": "/alignment-files/PKBFI7466ZNIX/",
"accession": "PKBFI7466ZNIX",
"aliases": [
"pankbase-consortium:EndoC-bH1_HEK293_emptyVector_GSE185430_AnalysisSet.SRR16217241.Aligned.sortedByCoord.out.bam"
],
"content_type": "alignments",
"creation_timestamp": "2026-01-06T00:56:03.880901+00:00",
"file_format": "bam",
"href": "/alignment-files/PKBFI7466ZNIX/@@download/PKBFI7466ZNIX.bam"
},
{
"@id": "/alignment-files/PKBFI3746EAJO/",
"accession": "PKBFI3746EAJO",
"aliases": [
"pankbase-consortium:EndoC-bH1_HEK293_emptyVector_GSE185430_AnalysisSet.SRR16217241.Aligned.toTranscriptome.out.bam"
],
"content_type": "transcriptome alignments",
"creation_timestamp": "2026-01-06T00:56:05.402411+00:00",
"file_format": "bam",
"href": "/alignment-files/PKBFI3746EAJO/@@download/PKBFI3746EAJO.bam"
},
{
"@id": "/alignment-files/PKBFI9858SVJZ/",
"accession": "PKBFI9858SVJZ",
"aliases": [
"pankbase-consortium:EndoC-bH1_HEK293_emptyVector_GSE185430_AnalysisSet.SRR16217242.Aligned.toTranscriptome.out.bam"
],
"content_type": "transcriptome alignments",
"creation_timestamp": "2026-01-06T00:56:10.493416+00:00",
"file_format": "bam",
"href": "/alignment-files/PKBFI9858SVJZ/@@download/PKBFI9858SVJZ.bam"
},
{
"@id": "/alignment-files/PKBFI7444BIAQ/",
"accession": "PKBFI7444BIAQ",
"aliases": [
"pankbase-consortium:EndoC-bH1_HEK293_emptyVector_GSE185430_AnalysisSet.SRR16217243.Aligned.toTranscriptome.out.bam"
],
"content_type": "transcriptome alignments",
"creation_timestamp": "2026-01-06T00:56:14.168643+00:00",
"file_format": "bam",
"href": "/alignment-files/PKBFI7444BIAQ/@@download/PKBFI7444BIAQ.bam"
},
{
"@id": "/alignment-files/PKBFI0124BPDC/",
"accession": "PKBFI0124BPDC",
"aliases": [
"pankbase-consortium:EndoC-bH1_HEK293_emptyVector_GSE185430_AnalysisSet.SRR16217254.Aligned.toTranscriptome.out.bam"
],
"content_type": "transcriptome alignments",
"creation_timestamp": "2026-01-06T00:56:25.925180+00:00",
"file_format": "bam",
"href": "/alignment-files/PKBFI0124BPDC/@@download/PKBFI0124BPDC.bam"
},
{
"@id": "/alignment-files/PKBFI4394DMIO/",
"accession": "PKBFI4394DMIO",
"aliases": [
"pankbase-consortium:EndoC-bH1_HEK293_emptyVector_GSE185430_AnalysisSet.SRR16217261.Aligned.sortedByCoord.out.md.bam"
],
"content_type": "alignments",
"creation_timestamp": "2026-01-06T00:56:31.295457+00:00",
"file_format": "bam",
"href": "/alignment-files/PKBFI4394DMIO/@@download/PKBFI4394DMIO.bam"
},
{
"@id": "/tabular-files/PKBFI6752MZSY/",
"accession": "PKBFI6752MZSY",
"aliases": [
"pankbase-consortium:EndoC-bH1_HEK293_emptyVector_GSE185430_AnalysisSet.SRR16217243.Log.final.out"
],
"content_type": "QC metrics",
"creation_timestamp": "2026-01-06T01:09:21.590488+00:00",
"file_format": "txt",
"href": "/tabular-files/PKBFI6752MZSY/@@download/PKBFI6752MZSY.txt.gz"
},
{
"@id": "/alignment-files/PKBFI6756XLTI/",
"accession": "PKBFI6756XLTI",
"aliases": [
"pankbase-consortium:EndoC-bH1_HEK293_emptyVector_GSE185430_AnalysisSet.SRR16217243.Aligned.sortedByCoord.out.bam"
],
"content_type": "alignments",
"creation_timestamp": "2026-01-06T00:56:12.872395+00:00",
"file_format": "bam",
"href": "/alignment-files/PKBFI6756XLTI/@@download/PKBFI6756XLTI.bam"
},
{
"@id": "/alignment-files/PKBFI4160YDPA/",
"accession": "PKBFI4160YDPA",
"aliases": [
"pankbase-consortium:EndoC-bH1_HEK293_emptyVector_GSE185430_AnalysisSet.SRR16217263.Aligned.sortedByCoord.out.bam"
],
"content_type": "alignments",
"creation_timestamp": "2026-01-06T00:56:38.157937+00:00",
"file_format": "bam",
"href": "/alignment-files/PKBFI4160YDPA/@@download/PKBFI4160YDPA.bam"
},
{
"@id": "/alignment-files/PKBFI3972VQXQ/",
"accession": "PKBFI3972VQXQ",
"aliases": [
"pankbase-consortium:EndoC-bH1_HEK293_emptyVector_GSE185430_AnalysisSet.SRR16217243.Aligned.sortedByCoord.out.md.bam"
],
"content_type": "alignments",
"creation_timestamp": "2026-01-06T00:56:15.418955+00:00",
"file_format": "bam",
"href": "/alignment-files/PKBFI3972VQXQ/@@download/PKBFI3972VQXQ.bam"
},
{
"@id": "/alignment-files/PKBFI3596MXWX/",
"accession": "PKBFI3596MXWX",
"aliases": [
"pankbase-consortium:EndoC-bH1_HEK293_emptyVector_GSE185430_AnalysisSet.SRR16217262.Aligned.toTranscriptome.out.bam"
],
"content_type": "transcriptome alignments",
"creation_timestamp": "2026-01-06T00:56:34.568669+00:00",
"file_format": "bam",
"href": "/alignment-files/PKBFI3596MXWX/@@download/PKBFI3596MXWX.bam"
},
{
"@id": "/tabular-files/PKBFI7531FUDT/",
"accession": "PKBFI7531FUDT",
"aliases": [
"pankbase-consortium:EndoC-bH1_HEK293_emptyVector_GSE185430_AnalysisSet.SRR16217243.rsem.genes.results"
],
"content_type": "element quantifications",
"creation_timestamp": "2026-01-06T01:09:24.834228+00:00",
"file_format": "tsv",
"href": "/tabular-files/PKBFI7531FUDT/@@download/PKBFI7531FUDT.tsv.gz"
},
{
"@id": "/tabular-files/PKBFI2278WDZR/",
"accession": "PKBFI2278WDZR",
"aliases": [
"pankbase-consortium:EndoC-bH1_HEK293_emptyVector_GSE185430_AnalysisSet.SRR16217252.Aligned.sortedByCoord.out.md.marked_dup_metrics.txt"
],
"content_type": "QC metrics",
"creation_timestamp": "2026-01-06T01:09:27.865827+00:00",
"file_format": "txt",
"href": "/tabular-files/PKBFI2278WDZR/@@download/PKBFI2278WDZR.txt.gz"
},
{
"@id": "/tabular-files/PKBFI9615MFXR/",
"accession": "PKBFI9615MFXR",
"aliases": [
"pankbase-consortium:EndoC-bH1_HEK293_emptyVector_GSE185430_AnalysisSet.SRR16217253.Aligned.sortedByCoord.out.md.marked_dup_metrics.txt"
],
"content_type": "QC metrics",
"creation_timestamp": "2026-01-06T01:09:33.666969+00:00",
"file_format": "txt",
"href": "/tabular-files/PKBFI9615MFXR/@@download/PKBFI9615MFXR.txt.gz"
},
{
"@id": "/tabular-files/PKBFI2854NISC/",
"accession": "PKBFI2854NISC",
"aliases": [
"pankbase-consortium:EndoC-bH1_HEK293_emptyVector_GSE185430_AnalysisSet.SRR16217253.rsem.genes.results"
],
"content_type": "element quantifications",
"creation_timestamp": "2026-01-06T01:09:36.428383+00:00",
"file_format": "tsv",
"href": "/tabular-files/PKBFI2854NISC/@@download/PKBFI2854NISC.tsv.gz"
},
{
"@id": "/alignment-files/PKBFI2867STWS/",
"accession": "PKBFI2867STWS",
"aliases": [
"pankbase-consortium:EndoC-bH1_HEK293_emptyVector_GSE185430_AnalysisSet.SRR16217252.Aligned.sortedByCoord.out.md.bam"
],
"content_type": "alignments",
"creation_timestamp": "2026-01-06T00:56:19.645819+00:00",
"file_format": "bam",
"href": "/alignment-files/PKBFI2867STWS/@@download/PKBFI2867STWS.bam"
},
{
"@id": "/alignment-files/PKBFI2188IQRJ/",
"accession": "PKBFI2188IQRJ",
"aliases": [
"pankbase-consortium:EndoC-bH1_HEK293_emptyVector_GSE185430_AnalysisSet.SRR16217262.Aligned.sortedByCoord.out.bam"
],
"content_type": "alignments",
"creation_timestamp": "2026-01-06T00:56:32.505554+00:00",
"file_format": "bam",
"href": "/alignment-files/PKBFI2188IQRJ/@@download/PKBFI2188IQRJ.bam"
},
{
"@id": "/alignment-files/PKBFI8951QXMA/",
"accession": "PKBFI8951QXMA",
"aliases": [
"pankbase-consortium:EndoC-bH1_HEK293_emptyVector_GSE185430_AnalysisSet.SRR16217262.Aligned.sortedByCoord.out.md.bam"
],
"content_type": "alignments",
"creation_timestamp": "2026-01-06T00:56:36.802792+00:00",
"file_format": "bam",
"href": "/alignment-files/PKBFI8951QXMA/@@download/PKBFI8951QXMA.bam"
},
{
"@id": "/tabular-files/PKBFI4641QXEA/",
"accession": "PKBFI4641QXEA",
"aliases": [
"pankbase-consortium:EndoC-bH1_HEK293_emptyVector_GSE185430_AnalysisSet.SRR16217241.rsem.isoforms.results"
],
"content_type": "element quantifications",
"creation_timestamp": "2026-01-06T01:09:15.452890+00:00",
"file_format": "tsv",
"href": "/tabular-files/PKBFI4641QXEA/@@download/PKBFI4641QXEA.tsv.gz"
},
{
"@id": "/tabular-files/PKBFI8571HBLC/",
"accession": "PKBFI8571HBLC",
"aliases": [
"pankbase-consortium:EndoC-bH1_HEK293_emptyVector_GSE185430_AnalysisSet.SRR16217254.Log.final.out"
],
"content_type": "QC metrics",
"creation_timestamp": "2026-01-06T01:09:38.494151+00:00",
"file_format": "txt",
"href": "/tabular-files/PKBFI8571HBLC/@@download/PKBFI8571HBLC.txt.gz"
},
{
"@id": "/tabular-files/PKBFI0556CUGT/",
"accession": "PKBFI0556CUGT",
"aliases": [
"pankbase-consortium:EndoC-bH1_HEK293_emptyVector_GSE185430_AnalysisSet.SRR16217261.Aligned.sortedByCoord.out.md.marked_dup_metrics.txt"
],
"content_type": "QC metrics",
"creation_timestamp": "2026-01-06T01:09:48.416062+00:00",
"file_format": "txt",
"href": "/tabular-files/PKBFI0556CUGT/@@download/PKBFI0556CUGT.txt.gz"
},
{
"@id": "/alignment-files/PKBFI2596PUVV/",
"accession": "PKBFI2596PUVV",
"aliases": [
"pankbase-consortium:EndoC-bH1_HEK293_emptyVector_GSE185430_AnalysisSet.SRR16217254.Aligned.sortedByCoord.out.bam"
],
"content_type": "alignments",
"creation_timestamp": "2026-01-06T00:56:24.795468+00:00",
"file_format": "bam",
"href": "/alignment-files/PKBFI2596PUVV/@@download/PKBFI2596PUVV.bam"
},
{
"@id": "/tabular-files/PKBFI4642VMZT/",
"accession": "PKBFI4642VMZT",
"aliases": [
"pankbase-consortium:EndoC-bH1_HEK293_emptyVector_GSE185430_AnalysisSet.SRR16217242.Aligned.sortedByCoord.out.md.marked_dup_metrics.txt"
],
"content_type": "QC metrics",
"creation_timestamp": "2026-01-06T01:09:17.365150+00:00",
"file_format": "txt",
"href": "/tabular-files/PKBFI4642VMZT/@@download/PKBFI4642VMZT.txt.gz"
},
{
"@id": "/tabular-files/PKBFI7773QWAO/",
"accession": "PKBFI7773QWAO",
"aliases": [
"pankbase-consortium:EndoC-bH1_HEK293_emptyVector_GSE185430_AnalysisSet.SRR16217242.rsem.isoforms.results"
],
"content_type": "element quantifications",
"creation_timestamp": "2026-01-06T01:09:20.512514+00:00",
"file_format": "tsv",
"href": "/tabular-files/PKBFI7773QWAO/@@download/PKBFI7773QWAO.tsv.gz"
},
{
"@id": "/tabular-files/PKBFI2856OPXI/",
"accession": "PKBFI2856OPXI",
"aliases": [
"pankbase-consortium:EndoC-bH1_HEK293_emptyVector_GSE185430_AnalysisSet.SRR16217243.Aligned.sortedByCoord.out.md.marked_dup_metrics.txt"
],
"content_type": "QC metrics",
"creation_timestamp": "2026-01-06T01:09:22.672600+00:00",
"file_format": "txt",
"href": "/tabular-files/PKBFI2856OPXI/@@download/PKBFI2856OPXI.txt.gz"
},
{
"@id": "/tabular-files/PKBFI9738UZOC/",
"accession": "PKBFI9738UZOC",
"aliases": [
"pankbase-consortium:EndoC-bH1_HEK293_emptyVector_GSE185430_AnalysisSet.SRR16217243.rsem.isoforms.results"
],
"content_type": "element quantifications",
"creation_timestamp": "2026-01-06T01:09:25.947719+00:00",
"file_format": "tsv",
"href": "/tabular-files/PKBFI9738UZOC/@@download/PKBFI9738UZOC.tsv.gz"
},
{
"@id": "/tabular-files/PKBFI1867MKGB/",
"accession": "PKBFI1867MKGB",
"aliases": [
"pankbase-consortium:EndoC-bH1_HEK293_emptyVector_GSE185430_AnalysisSet.SRR16217262.rsem.genes.results"
],
"content_type": "element quantifications",
"creation_timestamp": "2026-01-06T01:09:55.334415+00:00",
"file_format": "tsv",
"href": "/tabular-files/PKBFI1867MKGB/@@download/PKBFI1867MKGB.tsv.gz"
},
{
"@id": "/alignment-files/PKBFI4518BFHO/",
"accession": "PKBFI4518BFHO",
"aliases": [
"pankbase-consortium:EndoC-bH1_HEK293_emptyVector_GSE185430_AnalysisSet.SRR16217261.Aligned.sortedByCoord.out.bam"
],
"content_type": "alignments",
"creation_timestamp": "2026-01-06T00:56:28.351473+00:00",
"file_format": "bam",
"href": "/alignment-files/PKBFI4518BFHO/@@download/PKBFI4518BFHO.bam"
},
{
"@id": "/tabular-files/PKBFI9749AJNV/",
"accession": "PKBFI9749AJNV",
"aliases": [
"pankbase-consortium:EndoC-bH1_HEK293_emptyVector_GSE185430_AnalysisSet.SRR16217241.metrics.tsv"
],
"content_type": "QC metrics",
"creation_timestamp": "2026-01-06T01:09:12.900495+00:00",
"file_format": "tsv",
"href": "/tabular-files/PKBFI9749AJNV/@@download/PKBFI9749AJNV.tsv.gz"
},
{
"@id": "/tabular-files/PKBFI2053KSKC/",
"accession": "PKBFI2053KSKC",
"aliases": [
"pankbase-consortium:EndoC-bH1_HEK293_emptyVector_GSE185430_AnalysisSet.SRR16217242.Log.final.out"
],
"content_type": "QC metrics",
"creation_timestamp": "2026-01-06T01:09:16.381024+00:00",
"file_format": "txt",
"href": "/tabular-files/PKBFI2053KSKC/@@download/PKBFI2053KSKC.txt.gz"
},
{
"@id": "/tabular-files/PKBFI7189YXCD/",
"accession": "PKBFI7189YXCD",
"aliases": [
"pankbase-consortium:EndoC-bH1_HEK293_emptyVector_GSE185430_AnalysisSet.SRR16217254.metrics.tsv"
],
"content_type": "QC metrics",
"creation_timestamp": "2026-01-06T01:09:41.610058+00:00",
"file_format": "tsv",
"href": "/tabular-files/PKBFI7189YXCD/@@download/PKBFI7189YXCD.tsv.gz"
},
{
"@id": "/tabular-files/PKBFI7576NYOT/",
"accession": "PKBFI7576NYOT",
"aliases": [
"pankbase-consortium:EndoC-bH1_HEK293_emptyVector_GSE185430_AnalysisSet.SRR16217263.rsem.genes.results"
],
"content_type": "element quantifications",
"creation_timestamp": "2026-01-06T01:10:00.390075+00:00",
"file_format": "tsv",
"href": "/tabular-files/PKBFI7576NYOT/@@download/PKBFI7576NYOT.tsv.gz"
},
{
"@id": "/tabular-files/PKBFI4387FBID/",
"accession": "PKBFI4387FBID",
"aliases": [
"pankbase-consortium:EndoC-bH1_HEK293_emptyVector_GSE185430_AnalysisSet.SRR16217262.Log.final.out"
],
"content_type": "QC metrics",
"creation_timestamp": "2026-01-06T01:09:52.258136+00:00",
"file_format": "txt",
"href": "/tabular-files/PKBFI4387FBID/@@download/PKBFI4387FBID.txt.gz"
},
{
"@id": "/tabular-files/PKBFI7413UUUE/",
"accession": "PKBFI7413UUUE",
"aliases": [
"pankbase-consortium:EndoC-bH1_HEK293_emptyVector_GSE185430_AnalysisSet.SRR16217262.metrics.tsv"
],
"content_type": "QC metrics",
"creation_timestamp": "2026-01-06T01:09:54.170714+00:00",
"file_format": "tsv",
"href": "/tabular-files/PKBFI7413UUUE/@@download/PKBFI7413UUUE.tsv.gz"
},
{
"@id": "/tabular-files/PKBFI7870KHMP/",
"accession": "PKBFI7870KHMP",
"aliases": [
"pankbase-consortium:EndoC-bH1_HEK293_emptyVector_GSE185430_AnalysisSet.SRR16217241.rsem.genes.results"
],
"content_type": "element quantifications",
"creation_timestamp": "2026-01-06T01:09:14.290667+00:00",
"file_format": "tsv",
"href": "/tabular-files/PKBFI7870KHMP/@@download/PKBFI7870KHMP.tsv.gz"
},
{
"@id": "/tabular-files/PKBFI1598FHOU/",
"accession": "PKBFI1598FHOU",
"aliases": [
"pankbase-consortium:EndoC-bH1_HEK293_emptyVector_GSE185430_AnalysisSet.SRR16217242.metrics.tsv"
],
"content_type": "QC metrics",
"creation_timestamp": "2026-01-06T01:09:18.546332+00:00",
"file_format": "tsv",
"href": "/tabular-files/PKBFI1598FHOU/@@download/PKBFI1598FHOU.tsv.gz"
},
{
"@id": "/tabular-files/PKBFI5691KFWU/",
"accession": "PKBFI5691KFWU",
"aliases": [
"pankbase-consortium:EndoC-bH1_HEK293_emptyVector_GSE185430_AnalysisSet.SRR16217252.Log.final.out"
],
"content_type": "QC metrics",
"creation_timestamp": "2026-01-06T01:09:26.877801+00:00",
"file_format": "txt",
"href": "/tabular-files/PKBFI5691KFWU/@@download/PKBFI5691KFWU.txt.gz"
},
{
"@id": "/tabular-files/PKBFI0952AIWT/",
"accession": "PKBFI0952AIWT",
"aliases": [
"pankbase-consortium:EndoC-bH1_HEK293_emptyVector_GSE185430_AnalysisSet.SRR16217254.rsem.genes.results"
],
"content_type": "element quantifications",
"creation_timestamp": "2026-01-06T01:09:42.861745+00:00",
"file_format": "tsv",
"href": "/tabular-files/PKBFI0952AIWT/@@download/PKBFI0952AIWT.tsv.gz"
},
{
"@id": "/tabular-files/PKBFI7553BIVR/",
"accession": "PKBFI7553BIVR",
"aliases": [
"pankbase-consortium:EndoC-bH1_HEK293_emptyVector_GSE185430_AnalysisSet.SRR16217252.rsem.genes.results"
],
"content_type": "element quantifications",
"creation_timestamp": "2026-01-06T01:09:30.282165+00:00",
"file_format": "tsv",
"href": "/tabular-files/PKBFI7553BIVR/@@download/PKBFI7553BIVR.tsv.gz"
},
{
"@id": "/tabular-files/PKBFI2751GNWK/",
"accession": "PKBFI2751GNWK",
"aliases": [
"pankbase-consortium:EndoC-bH1_HEK293_emptyVector_GSE185430_AnalysisSet.SRR16217262.rsem.isoforms.results"
],
"content_type": "element quantifications",
"creation_timestamp": "2026-01-06T01:09:56.355057+00:00",
"file_format": "tsv",
"href": "/tabular-files/PKBFI2751GNWK/@@download/PKBFI2751GNWK.tsv.gz"
},
{
"@id": "/tabular-files/PKBFI0667ZRXF/",
"accession": "PKBFI0667ZRXF",
"aliases": [
"pankbase-consortium:EndoC-bH1_HEK293_emptyVector_GSE185430_AnalysisSet.SRR16217263.Aligned.sortedByCoord.out.md.marked_dup_metrics.txt"
],
"content_type": "QC metrics",
"creation_timestamp": "2026-01-06T01:09:58.225028+00:00",
"file_format": "txt",
"href": "/tabular-files/PKBFI0667ZRXF/@@download/PKBFI0667ZRXF.txt.gz"
},
{
"@id": "/tabular-files/PKBFI1019HQGE/",
"accession": "PKBFI1019HQGE",
"aliases": [
"pankbase-consortium:EndoC-bH1_HEK293_emptyVector_GSE185430_AnalysisSet.SRR16217253.Log.final.out"
],
"content_type": "QC metrics",
"creation_timestamp": "2026-01-06T01:09:32.591913+00:00",
"file_format": "txt",
"href": "/tabular-files/PKBFI1019HQGE/@@download/PKBFI1019HQGE.txt.gz"
},
{
"@id": "/tabular-files/PKBFI0162QCAM/",
"accession": "PKBFI0162QCAM",
"aliases": [
"pankbase-consortium:EndoC-bH1_HEK293_emptyVector_GSE185430_AnalysisSet.SRR16217241.Aligned.sortedByCoord.out.md.marked_dup_metrics.txt"
],
"content_type": "QC metrics",
"creation_timestamp": "2026-01-06T01:09:11.734109+00:00",
"file_format": "txt",
"href": "/tabular-files/PKBFI0162QCAM/@@download/PKBFI0162QCAM.txt.gz"
},
{
"@id": "/tabular-files/PKBFI5685FCOE/",
"accession": "PKBFI5685FCOE",
"aliases": [
"pankbase-consortium:EndoC-bH1_HEK293_emptyVector_GSE185430_AnalysisSet.SRR16217242.rsem.genes.results"
],
"content_type": "element quantifications",
"creation_timestamp": "2026-01-06T01:09:19.578573+00:00",
"file_format": "tsv",
"href": "/tabular-files/PKBFI5685FCOE/@@download/PKBFI5685FCOE.tsv.gz"
},
{
"@id": "/tabular-files/PKBFI4033ENKC/",
"accession": "PKBFI4033ENKC",
"aliases": [
"pankbase-consortium:EndoC-bH1_HEK293_emptyVector_GSE185430_AnalysisSet.SRR16217243.metrics.tsv"
],
"content_type": "QC metrics",
"creation_timestamp": "2026-01-06T01:09:23.672589+00:00",
"file_format": "tsv",
"href": "/tabular-files/PKBFI4033ENKC/@@download/PKBFI4033ENKC.tsv.gz"
},
{
"@id": "/tabular-files/PKBFI7438ADNR/",
"accession": "PKBFI7438ADNR",
"aliases": [
"pankbase-consortium:EndoC-bH1_HEK293_emptyVector_GSE185430_AnalysisSet.SRR16217252.metrics.tsv"
],
"content_type": "QC metrics",
"creation_timestamp": "2026-01-06T01:09:28.917356+00:00",
"file_format": "tsv",
"href": "/tabular-files/PKBFI7438ADNR/@@download/PKBFI7438ADNR.tsv.gz"
},
{
"@id": "/tabular-files/PKBFI7292DVDW/",
"accession": "PKBFI7292DVDW",
"aliases": [
"pankbase-consortium:EndoC-bH1_HEK293_emptyVector_GSE185430_AnalysisSet.SRR16217252.rsem.isoforms.results"
],
"content_type": "element quantifications",
"creation_timestamp": "2026-01-06T01:09:31.384638+00:00",
"file_format": "tsv",
"href": "/tabular-files/PKBFI7292DVDW/@@download/PKBFI7292DVDW.tsv.gz"
},
{
"@id": "/tabular-files/PKBFI6403PVSY/",
"accession": "PKBFI6403PVSY",
"aliases": [
"pankbase-consortium:EndoC-bH1_HEK293_emptyVector_GSE185430_AnalysisSet.SRR16217261.metrics.tsv"
],
"content_type": "QC metrics",
"creation_timestamp": "2026-01-06T01:09:49.333346+00:00",
"file_format": "tsv",
"href": "/tabular-files/PKBFI6403PVSY/@@download/PKBFI6403PVSY.tsv.gz"
},
{
"@id": "/tabular-files/PKBFI4733XIDX/",
"accession": "PKBFI4733XIDX",
"aliases": [
"pankbase-consortium:EndoC-bH1_HEK293_emptyVector_GSE185430_AnalysisSet.SRR16217241.Log.final.out"
],
"content_type": "QC metrics",
"creation_timestamp": "2026-01-06T01:09:10.654204+00:00",
"file_format": "txt",
"href": "/tabular-files/PKBFI4733XIDX/@@download/PKBFI4733XIDX.txt.gz"
},
{
"@id": "/tabular-files/PKBFI1307TFNE/",
"accession": "PKBFI1307TFNE",
"aliases": [
"pankbase-consortium:EndoC-bH1_HEK293_emptyVector_GSE185430_AnalysisSet.SRR16217253.rsem.isoforms.results"
],
"content_type": "element quantifications",
"creation_timestamp": "2026-01-06T01:09:37.398657+00:00",
"file_format": "tsv",
"href": "/tabular-files/PKBFI1307TFNE/@@download/PKBFI1307TFNE.tsv.gz"
},
{
"@id": "/tabular-files/PKBFI4435MUBS/",
"accession": "PKBFI4435MUBS",
"aliases": [
"pankbase-consortium:EndoC-bH1_HEK293_emptyVector_GSE185430_AnalysisSet.SRR16217254.Aligned.sortedByCoord.out.md.marked_dup_metrics.txt"
],
"content_type": "QC metrics",
"creation_timestamp": "2026-01-06T01:09:40.643412+00:00",
"file_format": "txt",
"href": "/tabular-files/PKBFI4435MUBS/@@download/PKBFI4435MUBS.txt.gz"
},
{
"@id": "/tabular-files/PKBFI8101PSWD/",
"accession": "PKBFI8101PSWD",
"aliases": [
"pankbase-consortium:EndoC-bH1_HEK293_emptyVector_GSE185430_AnalysisSet.SRR16217261.rsem.genes.results"
],
"content_type": "element quantifications",
"creation_timestamp": "2026-01-06T01:09:50.267974+00:00",
"file_format": "tsv",
"href": "/tabular-files/PKBFI8101PSWD/@@download/PKBFI8101PSWD.tsv.gz"
},
{
"@id": "/tabular-files/PKBFI7123ULIL/",
"accession": "PKBFI7123ULIL",
"aliases": [
"pankbase-consortium:EndoC-bH1_HEK293_emptyVector_GSE185430_AnalysisSet.SRR16217262.Aligned.sortedByCoord.out.md.marked_dup_metrics.txt"
],
"content_type": "QC metrics",
"creation_timestamp": "2026-01-06T01:09:53.253632+00:00",
"file_format": "txt",
"href": "/tabular-files/PKBFI7123ULIL/@@download/PKBFI7123ULIL.txt.gz"
},
{
"@id": "/tabular-files/PKBFI7874QSGF/",
"accession": "PKBFI7874QSGF",
"aliases": [
"pankbase-consortium:EndoC-bH1_HEK293_emptyVector_GSE185430_AnalysisSet.SRR16217253.metrics.tsv"
],
"content_type": "QC metrics",
"creation_timestamp": "2026-01-06T01:09:34.647965+00:00",
"file_format": "tsv",
"href": "/tabular-files/PKBFI7874QSGF/@@download/PKBFI7874QSGF.tsv.gz"
},
{
"@id": "/tabular-files/PKBFI9441EDJM/",
"accession": "PKBFI9441EDJM",
"aliases": [
"pankbase-consortium:EndoC-bH1_HEK293_emptyVector_GSE185430_AnalysisSet.SRR16217254.rsem.isoforms.results"
],
"content_type": "element quantifications",
"creation_timestamp": "2026-01-06T01:09:45.589763+00:00",
"file_format": "tsv",
"href": "/tabular-files/PKBFI9441EDJM/@@download/PKBFI9441EDJM.tsv.gz"
},
{
"@id": "/tabular-files/PKBFI9265KFCT/",
"accession": "PKBFI9265KFCT",
"aliases": [
"pankbase-consortium:EndoC-bH1_HEK293_emptyVector_GSE185430_AnalysisSet.SRR16217261.rsem.isoforms.results"
],
"content_type": "element quantifications",
"creation_timestamp": "2026-01-06T01:09:51.291353+00:00",
"file_format": "tsv",
"href": "/tabular-files/PKBFI9265KFCT/@@download/PKBFI9265KFCT.tsv.gz"
},
{
"@id": "/tabular-files/PKBFI2104BASB/",
"accession": "PKBFI2104BASB",
"aliases": [
"pankbase-consortium:EndoC-bH1_HEK293_emptyVector_GSE185430_AnalysisSet.SRR16217263.Log.final.out"
],
"content_type": "QC metrics",
"creation_timestamp": "2026-01-06T01:09:57.358435+00:00",
"file_format": "txt",
"href": "/tabular-files/PKBFI2104BASB/@@download/PKBFI2104BASB.txt.gz"
},
{
"@id": "/tabular-files/PKBFI4750QVOD/",
"accession": "PKBFI4750QVOD",
"aliases": [
"pankbase-consortium:EndoC-bH1_HEK293_emptyVector_GSE185430_AnalysisSet.SRR16217263.metrics.tsv"
],
"content_type": "QC metrics",
"creation_timestamp": "2026-01-06T01:09:59.172207+00:00",
"file_format": "tsv",
"href": "/tabular-files/PKBFI4750QVOD/@@download/PKBFI4750QVOD.tsv.gz"
},
{
"@id": "/tabular-files/PKBFI4530JMHZ/",
"accession": "PKBFI4530JMHZ",
"aliases": [
"pankbase-consortium:EndoC-bH1_HEK293_emptyVector_GSE185430_AnalysisSet.SRR16217261.Log.final.out"
],
"content_type": "QC metrics",
"creation_timestamp": "2026-01-06T01:09:46.780578+00:00",
"file_format": "txt",
"href": "/tabular-files/PKBFI4530JMHZ/@@download/PKBFI4530JMHZ.txt.gz"
},
{
"@id": "/tabular-files/PKBFI3082KRJD/",
"accession": "PKBFI3082KRJD",
"aliases": [
"pankbase-consortium:EndoC-bH1_HEK293_emptyVector_GSE185430_AnalysisSet.SRR16217263.rsem.isoforms.results"
],
"content_type": "element quantifications",
"creation_timestamp": "2026-01-06T01:10:01.636310+00:00",
"file_format": "tsv",
"href": "/tabular-files/PKBFI3082KRJD/@@download/PKBFI3082KRJD.tsv.gz"
}
],
"input_file_set_for": [],
"input_file_sets": [
{
"@id": "/measurement-sets/PKBDS4793QOSO/",
"accession": "PKBDS4793QOSO",
"aliases": [
"pankbase-consortium:EndoC-bH1_HEK293_emptyVector_GSE185430_MeasurementSet"
],
"file_set_type": "experimental data"
}
],
"lab": {
"@id": "/labs/pankbase-consortium/"
},
"publication_identifiers": [
"PMID:35058633",
"doi:10.1038/s42255-021-00516-2"
],
"release_timestamp": "2025-11-15T06:59:43.036498+00:00",
"samples": [
{
"@id": "/human-beta-cell-line/PKBSM3533XIDS/",
"@type": [
"HumanBetaCellLines",
"Biosample",
"Sample",
"Item"
],
"accession": "PKBSM3533XIDS",
"aliases": [
"pankbase-consortium:EndoC-bH1_HEK293_emptyVector_GSE185430"
],
"sample_terms": [
{
"@id": "/sample-terms/CVCL_909/",
"@type": [
"SampleTerm",
"OntologyTerm",
"Item"
],
"aliases": [
"kyle-gaulton:sample_EndoC-betaH1"
],
"status": "released",
"summary": "EndoC-βH1",
"term_name": "EndoC-βH1"
}
],
"status": "released",
"summary": "EndoC-βH1 cell line, depleted of HEK293",
"treatments": [
"/treatments/5a3751e7-abfe-4e4c-a721-708ea4c92a0b/"
]
}
],
"schema_version": "8",
"status": "released",
"submitted_by": {
"@id": "/users/5e3038c4-baa5-4589-b3d8-ad2fe634e826/",
"title": "Ying Sun"
},
"submitted_files_timestamp": "2026-01-06T00:56:03.880901+00:00",
"uuid": "44fe8e51-9058-4fbe-afdf-97db4d17d75b"
}
Supported by National Institutes of Health (NIH) grants U24 DK138515, U24 DK138512
Supplemental funds from the NIH Office of Data Science Strategies
Supplemental funds from the NIH Office of Data Science Strategies
