PKBFI7808YNTJ

{
    "@context": "/terms/",
    "@id": "/alignment-files/PKBFI7808YNTJ/",
    "@type": [
        "AlignmentFile",
        "File",
        "Item"
    ],
    "accession": "PKBFI7808YNTJ",
    "aliases": [
        "klaus-kaestner:pancreaticAlphaCell_AnalysisSet_RNAseq_HPAP-004_PICARD-bam"
    ],
    "analysis_step_version": "/analysis-step-versions/29da2cbc-42cc-4a39-9e90-9486cb4b31c8/",
    "assembly": "GRCh38",
    "audit": {},
    "award": {
        "@id": "/awards/UC4DK112217/"
    },
    "collections": [
        "PanKbase"
    ],
    "content_summary": "filtered alignments",
    "content_type": "alignments",
    "controlled_access": false,
    "creation_timestamp": "2025-04-17T21:29:23.612263+00:00",
    "derived_from": [
        "/alignment-files/PKBFI4137VLIF/"
    ],
    "description": "The file contains RNA-seq read alignments with duplicates marked and molecular tags added.",
    "file_format": "bam",
    "file_set": "/analysis-sets/PKBDS2044KKEZ/",
    "file_url": "https://pankbase-data-v1.s3.us-west-2.amazonaws.com/processed_data/bulk_RNA/sorted_alpha/SAMN19776437/HPAP-004.Aligned.sortedByCoord.out.md.bam",
    "filtered": true,
    "gene_list_for": [],
    "href": "/alignment-files/PKBFI7808YNTJ/@@download/PKBFI7808YNTJ.bam",
    "input_file_for": [
        "/tabular-files/PKBFI3996GNFN/",
        "/tabular-files/PKBFI6745XEKR/"
    ],
    "integrated_in": [],
    "lab": {
        "@id": "/labs/klaus-kaestner/",
        "title": "Klaus Kaestner, UPenn"
    },
    "loci_list_for": [],
    "md5sum": "4386b21d30b3a604e9cc76ffadafa8d1",
    "redacted": false,
    "reference_files": [
        "/reference-files/PKBFI6475GTLH/",
        "/reference-files/PKBFI0723SUOK/"
    ],
    "release_timestamp": "2025-06-15T05:32:25.124839+00:00",
    "schema_version": "11",
    "status": "released",
    "submitted_by": {
        "@id": "/users/5e3038c4-baa5-4589-b3d8-ad2fe634e826/",
        "title": "Ying Sun"
    },
    "summary": "GRCh38 filtered alignments",
    "upload_status": "validated",
    "uuid": "5c2feb86-46d8-4e8c-a301-2f9c8a82b2b1"
}