PKBFI7161CDIE

{
    "@context": "/terms/",
    "@id": "/alignment-files/PKBFI7161CDIE/",
    "@type": [
        "AlignmentFile",
        "File",
        "Item"
    ],
    "accession": "PKBFI7161CDIE",
    "aliases": [
        "pankbase-consortium:EndoC-bh1_treated_T-antigen2046SIX3_GSE79469_AnalysisSet.SRR3546391.Aligned.sortedByCoord.out.bam"
    ],
    "analysis_step_version": "/analysis-step-versions/69b5e3e3-114a-4dba-ad95-ce81f48c2f63/",
    "assembly": "GRCh38",
    "audit": {},
    "award": {
        "@id": "/awards/U24DK138512-DK138515/",
        "component": "data coordination"
    },
    "collections": [
        "PanKbase"
    ],
    "content_type": "alignments",
    "controlled_access": false,
    "creation_timestamp": "2026-01-07T18:06:22.215988+00:00",
    "description": "The binary file from STAR is a coordinate-sorted BAM file containing aligned RNA-seq reads, ready for downstream analysis such as quantification or variant calling.",
    "file_format": "bam",
    "file_set": "/analysis-sets/PKBDS5022XNLL/",
    "file_url": "https://pankbase-data-v1.s3.us-west-2.amazonaws.com/processed_data/bulk_RNA/pancreatic_EndoC/GSE79469/star_out/SRR3546391.Aligned.sortedByCoord.out.bam",
    "filtered": true,
    "gene_list_for": [],
    "href": "/alignment-files/PKBFI7161CDIE/@@download/PKBFI7161CDIE.bam",
    "input_file_for": [
        "/alignment-files/PKBFI6187QDYQ/"
    ],
    "integrated_in": [],
    "lab": {
        "@id": "/labs/pankbase-consortium/"
    },
    "loci_list_for": [],
    "md5sum": "804281f6a050b7720877781db4689519",
    "redacted": false,
    "reference_files": [
        "/reference-files/PKBFI6475GTLH/",
        "/reference-files/PKBFI0723SUOK/"
    ],
    "release_timestamp": "2026-03-03T19:33:27.312090+00:00",
    "schema_version": "11",
    "status": "released",
    "submitted_by": {
        "@id": "/users/5e3038c4-baa5-4589-b3d8-ad2fe634e826/",
        "title": "Ying Sun"
    },
    "summary": "GRCh38",
    "upload_status": "validated",
    "uuid": "0b9e6b58-c6fa-469f-9b2f-7b8940db2067"
}