PKBFI5575VENH

{
    "@context": "/terms/",
    "@id": "/alignment-files/PKBFI5575VENH/",
    "@type": [
        "AlignmentFile",
        "File",
        "Item"
    ],
    "accession": "PKBFI5575VENH",
    "aliases": [
        "pankbase-consortium:EndoC-bH1_treated_NLRC5IFNa8hr_GSE202852_AnalysisSet.SRR19178523.Aligned.sortedByCoord.out.md.bam"
    ],
    "analysis_step_version": "/analysis-step-versions/29da2cbc-42cc-4a39-9e90-9486cb4b31c8/",
    "assembly": "GRCh38",
    "audit": {
        "INTERNAL_ACTION": [
            {
                "category": "mismatched status",
                "detail": "Released alignment file [PKBFI5575VENH](/alignment-files/PKBFI5575VENH/) has in progress subobject alignment file [PKBFI5406FCDG](/alignment-files/PKBFI5406FCDG/).",
                "level": 30,
                "level_name": "INTERNAL_ACTION",
                "name": "audit_item_status",
                "path": "/alignment-files/PKBFI5575VENH/"
            }
        ]
    },
    "award": {
        "@id": "/awards/U24DK138512-DK138515/",
        "component": "data coordination"
    },
    "collections": [
        "PanKbase"
    ],
    "content_type": "alignments",
    "controlled_access": false,
    "creation_timestamp": "2026-01-06T19:21:04.281768+00:00",
    "derived_from": [
        "/alignment-files/PKBFI5406FCDG/"
    ],
    "description": "The file contains RNA-seq read alignments with duplicates marked and molecular tags added.",
    "file_format": "bam",
    "file_set": "/analysis-sets/PKBDS6594ODIR/",
    "file_url": "https://pankbase-data-v1.s3.us-west-2.amazonaws.com/processed_data/bulk_RNA/pancreatic_EndoC/GSE202852/picard_out/SRR19178523.Aligned.sortedByCoord.out.md.bam",
    "filtered": true,
    "gene_list_for": [],
    "href": "/alignment-files/PKBFI5575VENH/@@download/PKBFI5575VENH.bam",
    "input_file_for": [
        "/tabular-files/PKBFI0886MAZO/",
        "/tabular-files/PKBFI4254CJZG/"
    ],
    "integrated_in": [],
    "lab": {
        "@id": "/labs/pankbase-consortium/"
    },
    "loci_list_for": [],
    "md5sum": "389055e0c03cb75b89e178f703604802",
    "redacted": false,
    "reference_files": [
        "/reference-files/PKBFI6475GTLH/",
        "/reference-files/PKBFI0723SUOK/"
    ],
    "release_timestamp": "2026-03-03T19:33:05.350930+00:00",
    "schema_version": "11",
    "status": "released",
    "submitted_by": {
        "@id": "/users/5e3038c4-baa5-4589-b3d8-ad2fe634e826/",
        "title": "Ying Sun"
    },
    "summary": "GRCh38",
    "upload_status": "validated",
    "uuid": "8e46889f-3cb9-4a8d-a7bf-ccaddd36d6ee"
}