PKBFI5405VFAT

{
    "@context": "/terms/",
    "@id": "/alignment-files/PKBFI5405VFAT/",
    "@type": [
        "AlignmentFile",
        "File",
        "Item"
    ],
    "accession": "PKBFI5405VFAT",
    "aliases": [
        "pankbase-consortium:EndoC-bH1_treated_IFNgIL1b48hr_GSE137136_AnalysisSet.SRR10088648.Aligned.sortedByCoord.out.bam"
    ],
    "analysis_step_version": "/analysis-step-versions/69b5e3e3-114a-4dba-ad95-ce81f48c2f63/",
    "assembly": "GRCh38",
    "audit": {},
    "award": {
        "@id": "/awards/U24DK138512-DK138515/",
        "component": "data coordination"
    },
    "collections": [
        "PanKbase"
    ],
    "content_type": "alignments",
    "controlled_access": false,
    "creation_timestamp": "2026-01-05T20:55:21.245526+00:00",
    "description": "The binary file from STAR is a coordinate-sorted BAM file containing aligned RNA-seq reads, ready for downstream analysis such as quantification or variant calling.",
    "file_format": "bam",
    "file_set": "/analysis-sets/PKBDS3529JESA/",
    "file_url": "https://pankbase-data-v1.s3.us-west-2.amazonaws.com/processed_data/bulk_RNA/pancreatic_EndoC/GSE137136/star_out/SRR10088648.Aligned.sortedByCoord.out.bam",
    "filtered": true,
    "gene_list_for": [],
    "href": "/alignment-files/PKBFI5405VFAT/@@download/PKBFI5405VFAT.bam",
    "input_file_for": [
        "/alignment-files/PKBFI1507QMGL/"
    ],
    "integrated_in": [],
    "lab": {
        "@id": "/labs/pankbase-consortium/"
    },
    "loci_list_for": [],
    "md5sum": "6d6959deee4f8ae9be971b6b091968cf",
    "notes": "SRR10088648.Aligned.sortedByCoord.out.bam",
    "redacted": false,
    "reference_files": [
        "/reference-files/PKBFI6475GTLH/",
        "/reference-files/PKBFI0723SUOK/"
    ],
    "release_timestamp": "2026-01-07T23:37:53.072653+00:00",
    "schema_version": "11",
    "status": "released",
    "submitted_by": {
        "@id": "/users/5e3038c4-baa5-4589-b3d8-ad2fe634e826/",
        "title": "Ying Sun"
    },
    "summary": "GRCh38",
    "upload_status": "validated",
    "uuid": "e1d163dc-9445-41db-aeba-b26713e0e902"
}