PKBFI2516XJRB

{
    "@context": "/terms/",
    "@id": "/alignment-files/PKBFI2516XJRB/",
    "@type": [
        "AlignmentFile",
        "File",
        "Item"
    ],
    "accession": "PKBFI2516XJRB",
    "aliases": [
        "pankbase-consortium:bulkRNA_GSE138748_IIDP-SAMN08773851_betaCell_Control_AnalysisSet-SRR10260804.Aligned.sortedByCoord.out.md.bam"
    ],
    "analysis_step_version": "/analysis-step-versions/29da2cbc-42cc-4a39-9e90-9486cb4b31c8/",
    "assembly": "GRCh38",
    "audit": {
        "INTERNAL_ACTION": [
            {
                "category": "mismatched status",
                "detail": "Released alignment file [PKBFI2516XJRB](/alignment-files/PKBFI2516XJRB/) has in progress subobject alignment file [PKBFI2423UAIL](/alignment-files/PKBFI2423UAIL/).",
                "level": 30,
                "level_name": "INTERNAL_ACTION",
                "name": "audit_item_status",
                "path": "/alignment-files/PKBFI2516XJRB/"
            }
        ]
    },
    "award": {
        "@id": "/awards/U24DK138512-DK138515/",
        "component": "data coordination"
    },
    "collections": [
        "PanKbase"
    ],
    "content_type": "alignments",
    "controlled_access": false,
    "creation_timestamp": "2026-01-29T20:01:20.039829+00:00",
    "derived_from": [
        "/alignment-files/PKBFI2423UAIL/"
    ],
    "description": "The file contains RNA-seq read alignments with duplicates marked and molecular tags added.",
    "file_format": "bam",
    "file_set": "/analysis-sets/PKBDS6605CAVJ/",
    "file_url": "https://pankbase-data-v1.s3.us-west-2.amazonaws.com/processed_data/bulk_RNA/pancreatic_islets/GSE138748/picard_out/SRR10260804.Aligned.sortedByCoord.out.md.bam",
    "filtered": true,
    "gene_list_for": [],
    "href": "/alignment-files/PKBFI2516XJRB/@@download/PKBFI2516XJRB.bam",
    "input_file_for": [
        "/tabular-files/PKBFI3786KMUE/",
        "/tabular-files/PKBFI5783EWZB/"
    ],
    "integrated_in": [],
    "lab": {
        "@id": "/labs/pankbase-consortium/"
    },
    "loci_list_for": [],
    "md5sum": "2e4c006683153c65c683c4012b23ea10",
    "redacted": false,
    "reference_files": [
        "/reference-files/PKBFI6475GTLH/",
        "/reference-files/PKBFI0723SUOK/"
    ],
    "release_timestamp": "2026-03-03T19:30:20.949748+00:00",
    "schema_version": "11",
    "status": "released",
    "submitted_by": {
        "@id": "/users/5e3038c4-baa5-4589-b3d8-ad2fe634e826/",
        "title": "Ying Sun"
    },
    "summary": "GRCh38",
    "upload_status": "validated",
    "uuid": "6e9768e4-3358-4090-bbb8-0663bda36888"
}