PKBFI0799PYNI

{
    "@context": "/terms/",
    "@id": "/alignment-files/PKBFI0799PYNI/",
    "@type": [
        "AlignmentFile",
        "File",
        "Item"
    ],
    "accession": "PKBFI0799PYNI",
    "aliases": [
        "joyce-niland:Prodo_scRNAseq_SRR12831416_infected_with_SARS-CoV-2_Alignment_Aligned.sortedByCoord.out.bam"
    ],
    "assembly": "GRCh38",
    "audit": {},
    "award": {
        "@id": "/awards/U24DK098085/"
    },
    "content_summary": "filtered alignments",
    "content_type": "alignments",
    "controlled_access": false,
    "creation_timestamp": "2025-05-19T18:54:06.179883+00:00",
    "file_format": "bam",
    "file_set": "/analysis-sets/PKBDS0269YCWP/",
    "file_url": "https://pankbase-data-v1.s3.us-west-2.amazonaws.com/processed_data/single_cell_RNA/Prodo_gencode_v39/starsolo/SRR12831416-hg38/SRR12831416-hg38.Aligned.sortedByCoord.out.bam",
    "filtered": true,
    "gene_list_for": [],
    "href": "/alignment-files/PKBFI0799PYNI/@@download/PKBFI0799PYNI.bam",
    "input_file_for": [
        "/alignment-files/PKBFI8987NWRE/"
    ],
    "integrated_in": [],
    "lab": {
        "@id": "/labs/joyce-niland/",
        "title": "Joyce Niland, CoH"
    },
    "loci_list_for": [],
    "md5sum": "8899ea5e4958aad5a2605c6c7be3ab1e",
    "redacted": false,
    "reference_files": [
        "/reference-files/PKBFI6475GTLH/",
        "/reference-files/PKBFI0723SUOK/"
    ],
    "release_timestamp": "2025-06-15T05:49:07.278568+00:00",
    "schema_version": "11",
    "status": "released",
    "submitted_by": {
        "@id": "/users/5e3038c4-baa5-4589-b3d8-ad2fe634e826/",
        "title": "Ying Sun"
    },
    "submitter_comment": "SRR12831416",
    "summary": "GRCh38 filtered alignments",
    "upload_status": "validated",
    "uuid": "e1603d6f-471c-41e1-b948-e781d1ba72ea"
}